Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J09
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   4.4  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   4.4  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    24   7.8  

>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 214 VLLVNFHIFFLNNINVPYK 158
           +L   F I F NN+N+P+K
Sbjct: 7   ILFFLFGIAFANNLNIPWK 25


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 176 YKCAL*MLNYLRYCYFNIIFSYLKI 102
           ++  L  LN LRYC  NI+  + K+
Sbjct: 493 HRSVLSRLNPLRYCSPNIVLQFAKV 517


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 147 STLLLF*YNI*LFKNI*NKLK*CKF*NILLLN 52
           STLLL+  +  +FKN  +  K C F N LLL+
Sbjct: 319 STLLLYNSDGAIFKNPPSSKKECDFYNQLLLD 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,112
Number of Sequences: 5004
Number of extensions: 14935
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)