Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J07
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    27   2.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   6.8  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   6.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   9.0  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   9.0  

>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 303 LDVNNYVCDRCLEGHKHKSQRDRSCCIVE 217
           +D  NY C  CL GH+  S + +   ++E
Sbjct: 4   IDGKNYACVVCLRGHRGSSCQHQERALIE 32


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 392  WLLVEESPYLQARSTLSLEDTAFSSNS 312
            WL + + P L+ +  + LEDT  + NS
Sbjct: 1143 WLEIRDDPELKMKDKIFLEDTKQTDNS 1169


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 22  YPSLFSQFFQNRLXPXTHKNHSIXXTXQTLFSSXR*GPXXTDTTYYVQQRPSASLSTRQ 198
           +P L    FQ+   P +HK+ S+  T  ++ SS    P    +       PS SLS+ +
Sbjct: 55  FPGLEPHVFQHSQSPLSHKDASLLATMPSVASS---NPSLISSGSSQTGSPSQSLSSNK 110


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 9   HKNYIPISLQSVFPKSSXAXHAQKSFNFXXXSNSFLVIXLRSXXHGHNLL 158
           H N   + LQ+ F  SS   HA K F F   S    +  + S     NLL
Sbjct: 56  HPNGPQLRLQTHFFHSSSPMHATKGFRFPKSSTPLTLPAVLSVASFANLL 105


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 431 HLREPHPPLSTTTWLLVEESPYLQARSTL 345
           H +  H PLS+   LLV+E P    R+ L
Sbjct: 187 HEKRLHGPLSSLVKLLVQEMPSFTRRTIL 215


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 384 RGGESVSSGQIDAFLRGH 331
           RGGE +S  +IDA L  H
Sbjct: 410 RGGEKISPAEIDAVLMQH 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,198
Number of Sequences: 5004
Number of extensions: 25172
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)