Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_J06
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical pr... 316 8e-87
Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical pr... 282 2e-76
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical pr... 32 0.36
AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical ... 28 5.9
AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf (tbp-asso... 28 5.9
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z68343-3|CAA92778.1| 412|Caenorhabditis elegans Hypothetical
protein F59B8.2 protein.
Length = 412
Score = 316 bits (777), Expect = 8e-87
Identities = 147/189 (77%), Positives = 165/189 (87%), Gaps = 2/189 (1%)
Frame = -2
Query: 723 YDGRFKDIFQDIYDREYKXQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACXNYDGDVQS 544
YDGRFKDIF +IY EY+ +F+ AGIWYEHRLIDDMVA AMKS+GGFVWAC NYDGDVQS
Sbjct: 219 YDGRFKDIFAEIYP-EYEAEFKAAGIWYEHRLIDDMVAQAMKSDGGFVWACKNYDGDVQS 277
Query: 543 DSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTR 364
DSVAQGYGSLGLMTSVL+CPDGKTVEAEAAHGTVTRH+R +Q+G+ETSTNPIASIFAW+R
Sbjct: 278 DSVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSR 337
Query: 363 GLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKGMN--NVKRSDYYETFE 190
GL HRA LD N AL+ FA LE VCIET+E+G +TKDLAIC+KG N V R+DY TFE
Sbjct: 338 GLAHRATLDKNSALETFANNLEAVCIETMEAGFLTKDLAICVKGGNASAVTRTDYLNTFE 397
Query: 189 FMDKLAENL 163
F+DKLAENL
Sbjct: 398 FLDKLAENL 406
>Z81479-7|CAB03943.1| 435|Caenorhabditis elegans Hypothetical
protein C34F6.8 protein.
Length = 435
Score = 282 bits (692), Expect = 2e-76
Identities = 128/184 (69%), Positives = 151/184 (82%), Gaps = 1/184 (0%)
Frame = -2
Query: 723 YDGRFKDIFQDIYDREYKXQFEDAGIWYEHRLIDDMVAYAMKSEGGFVWACXNYDGDVQS 544
YDGRFKDIFQDIY+++Y+ F++ IWYEHRLIDD VA A+KS GGFVWAC NYDGDVQS
Sbjct: 241 YDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLIDDQVAQALKSSGGFVWACKNYDGDVQS 300
Query: 543 DSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFAWTR 364
D VAQGYGSLGLM+SVL+CPDGKT+EAEAAHGTVTRH+R +Q+G TSTNPIASIFAWTR
Sbjct: 301 DIVAQGYGSLGLMSSVLMCPDGKTIEAEAAHGTVTRHYREHQKGNSTSTNPIASIFAWTR 360
Query: 363 GLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKG-MNNVKRSDYYETFEF 187
GL HR LDNN+ALK F+ TLEK CI+T+E G MTKDL+ICI G ++ Y T +F
Sbjct: 361 GLHHRGVLDNNEALKTFSLTLEKACIDTVEEGKMTKDLSICIHGTKKGTEKGAYLITEDF 420
Query: 186 MDKL 175
+ +
Sbjct: 421 LSAI 424
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 513 PVTHSPEQHYQIVRLHHNFXRPRQIHPLIS 602
PVT +PE+H + V+L HN P + PL++
Sbjct: 1208 PVTVTPEEHAEQVQLLHNLQNPSILRPLLN 1237
>Z70307-9|CAE54887.1| 246|Caenorhabditis elegans Hypothetical
protein C39E9.8b protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -2
Query: 405 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 229
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 228 NNV--KRSDYYETFEFMDKLAEN 166
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>Z70307-8|CAA94333.2| 248|Caenorhabditis elegans Hypothetical
protein C39E9.8a protein.
Length = 248
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Frame = -2
Query: 405 TSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAI-CIKGM 229
T+T+PI SI +L+RAKL ++ + + ++VC+E E + KD + C +
Sbjct: 21 TATDPIDSISTQGADILNRAKL-TGQTVRQCSCSEQRVCVE--EMKLQAKDCTVPCFQKF 77
Query: 228 NNV--KRSDYYETFEFMDKLAEN 166
+++ + +D + F+ D + E+
Sbjct: 78 SSITSRPNDLKKCFDEKDNILED 100
>AF067942-1|AAG45570.1| 488|Caenorhabditis elegans Hypothetical
protein ZK6.8 protein.
Length = 488
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -2
Query: 552 VQSDSVAQGYGSLGLMTSVLICPDGKTVEAEAAHGTVTRHFRFYQQGKETSTNPIASIFA 373
+ S + G G + L+T L G V + A+ TVT+HF ++ +T + S+FA
Sbjct: 159 IGSSCMIVGAGIIALIT-FLTAGQGSEVAMDLANATVTQHFE--RRFSDTEIYLLFSVFA 215
Query: 372 WTR--GLLHRAKLDNNDALKNFAETLEKV 292
G + A L +ND + N E+ +K+
Sbjct: 216 AISFVGCITFALLPSND-IGNCIESSKKI 243
>AL032620-1|CAA21487.1| 354|Caenorhabditis elegans Hypothetical
protein Y36E3A.1 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Frame = -2
Query: 414 GKETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIK 235
G S PI S+F + + L+H+ ++ +DA+K E L+K ++ G ++A I+
Sbjct: 255 GIGNSILPIQSLFHFEKFLIHKLRITVDDAIK-IKEMLDKP--NNLKDGYFRVEIANKIE 311
Query: 234 -----GMNNVKRSD----YYETFEFMDKLAENLKVAL 151
G + + R+ YY+T E + L + + +AL
Sbjct: 312 LARVFGTDYIDRNGEITMYYQTEERLKYLIKFIPIAL 348
>AF025469-2|AAG00033.2| 470|Caenorhabditis elegans Taf
(tbp-associated transcriptionfactor) family protein 6.1
protein.
Length = 470
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -2
Query: 411 KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKDLAICIKG 232
K T ++ S R + AK+D LK T+E I T+E I KD+ G
Sbjct: 189 KNTPSSSTTSSLQMFRDAVKTAKIDQKVGLK--PSTIE---ILTVEQQIFMKDIITVCMG 243
Query: 231 MNNVKRSDYYETFE 190
++ KR + T E
Sbjct: 244 QDDKKRHEALYTLE 257
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 429 RFYQQG-KETSTNPIASIFAWTRGLLHRAKLDNNDALKNFAETLEKVCIETIESGIMTKD 253
R Y++ KE I I WT+ + + DN+ K + T+E V + TI+ +T+
Sbjct: 966 RLYEEKEKEQRKKQIKGIEKWTKSMDFK---DNHKTAKFYNTTIENVNVTTIDKDHITES 1022
Query: 252 LA 247
A
Sbjct: 1023 YA 1024
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,850
Number of Sequences: 27780
Number of extensions: 321294
Number of successful extensions: 669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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