Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J04
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0317 + 24039343-24042717                                         31   0.97 
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305...    30   2.2  
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619...    29   2.9  
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    29   5.2  

>05_05_0317 + 24039343-24042717
          Length = 1124

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 505 KSKWCSNVESAYTCMWLLNCWLNNHTPAEIVK 410
           +S+  S V S++ C+WL NC+ N+    +I K
Sbjct: 99  RSRHLSKVRSSFCCLWLNNCFSNHKIVQQIRK 130


>05_05_0270 -
           23728986-23729267,23729575-23730120,23730207-23730561,
           23731147-23731442,23731665-23731714,23731802-23731904,
           23732059-23732148,23732328-23732384,23732571-23732618,
           23732725-23732753,23732940-23733087
          Length = 667

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +3

Query: 546 SQNSVLMSFNITGKFPPSLCIL*SSVALICYHLSF*HYFVLFTNNT*IKVLFIVSYW 716
           SQ +  +  N T KFPPS+     +++ I +H++      LF  +T IK LF+ S+W
Sbjct: 74  SQENDRLPVNDTNKFPPSIEKSAFAISWILFHMA------LFCISTAIKALFL-SFW 123


>01_07_0068 -
           40861266-40861381,40861469-40861718,40861813-40861914,
           40862687-40862759,40863590-40863754,40866380-40866459,
           40867565-40867630,40867764-40868123,40868388-40868648
          Length = 490

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 380 FQHEFGNIHMLYNFSRCMII 439
           F HE GNI++LY FS   I+
Sbjct: 382 FDHEMGNINVLYRFSNIRIV 401


>02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365,
            17147469-17147551,17147688-17147815,17147897-17147983,
            17148064-17148174,17148502-17148669,17148753-17148837,
            17148921-17149037,17149127-17149203,17149299-17149370,
            17150538-17150634,17150750-17150952,17151115-17151217,
            17151324-17151391,17151461-17151514,17151595-17151704,
            17151982-17152060,17152171-17152233,17153410-17153529,
            17153913-17153969,17154071-17154187,17156426-17156476,
            17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 502  SKWCSNVESAYTCMWLLNCWLNNHTPAEIVKHMN 401
            ++W  N+E AY  MW L C   +  P ++++  N
Sbjct: 914  ARWVRNLERAYYKMWNLYCSGRHREPFKVIEDDN 947


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,043
Number of Sequences: 37544
Number of extensions: 236868
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)