Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J03
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   152   5e-38
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   124   1e-29
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  152 bits (369), Expect = 5e-38
 Identities = 79/178 (44%), Positives = 112/178 (62%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I+ RVL RPD + L  +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++VS L
Sbjct: 99  INCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRL 158

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           +R  L++RAA FNI+LDDVSLT + F  E+T                    +RA+ E+Q 
Sbjct: 159 VRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQG 218

Query: 420 KIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMIN 247
            IV+                  PG+++LRK+  A+ I+ ++++S N+V L  ++L+++
Sbjct: 219 FIVRAQGEGRAAQLIGEAIKNKPGFIELRKLETAREIANILSKSNNKVMLNASTLLLD 276


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  124 bits (299), Expect = 1e-29
 Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 2/173 (1%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           ++LRVL RP+  ML  +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+ VS  
Sbjct: 89  LTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAK 148

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           IR+ELV+RA +F I L+DVS+T ++FGKE+T                    E+++QERQ 
Sbjct: 149 IRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQERQA 208

Query: 420 KIVQXXXXXXXXXXXXXXXXMNPGYL-KLRKIRAAQSISRMIAQSQNRV-FLP 268
            +++                   G L ++R++  ++ ++  +A    +V +LP
Sbjct: 209 NVIRAEGEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTYLP 261


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 524 KLSSVRDTSSRIILKSAARSTNSLLISRDTC*RCVISWEALNLATTDFRTSLHIDGKTFS 703
           ++SS   + S  I  +++ + +S +IS         S      +++DF +S+       S
Sbjct: 506 EVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGIS 565

Query: 704 S*SVPSCLYIVASILASGRXS 766
           S S+PS    V+SIL+S   S
Sbjct: 566 SSSIPSTFSSVSSILSSSTSS 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,286
Number of Sequences: 5004
Number of extensions: 43349
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)