Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J03
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...   155   4e-38
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702...   151   5e-37
02_04_0362 - 22366668-22367516                                        132   4e-31
04_04_0143 - 23091613-23092467                                        128   5e-30
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133...   116   2e-26
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    51   1e-06
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245...    30   1.8  

>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score =  155 bits (376), Expect = 4e-38
 Identities = 85/190 (44%), Positives = 116/190 (61%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I LRVL RP    L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS  
Sbjct: 172 IGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE 231

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           IR+ L ERA +FNI LDDVS+T LSFGKE+T                    E+A+Q+++ 
Sbjct: 232 IRKILTERARNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRS 291

Query: 420 KIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMINLQ 241
            I++                 NP +L LR+I AA+ IS  ++ S N+VFL  N L++NLQ
Sbjct: 292 AIIRAQGEAKSAELIGQAIANNPAFLALRQIEAAREISHTMSSSANKVFLDSNDLLLNLQ 351

Query: 240 DPTFDDLSEK 211
             T  + S+K
Sbjct: 352 QLTVANKSKK 361


>03_06_0626 -
           35169352-35169546,35169736-35169948,35170102-35170272,
           35170826-35170942,35171078-35171233
          Length = 283

 Score =  151 bits (367), Expect = 5e-37
 Identities = 82/190 (43%), Positives = 115/190 (60%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I LRVL RP    L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS  
Sbjct: 94  IGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSRE 153

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           IR+ L ERA++FNI LDDVS+T LSFGKE+T                    E+A+Q+++ 
Sbjct: 154 IRKILTERASNFNIALDDVSITSLSFGKEFTHAIEAKQVAAQEAERAKFIVEKAEQDKRS 213

Query: 420 KIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMINLQ 241
            I++                 NP +L LR+I AA+ IS  +A S N+V+L    L++ LQ
Sbjct: 214 AIIRAQGEAKSAQLIGEAINNNPAFLALRQIEAAREISHTMASSNNKVYLDSKDLLLGLQ 273

Query: 240 DPTFDDLSEK 211
               D+ ++K
Sbjct: 274 QLNVDNKNKK 283


>02_04_0362 - 22366668-22367516
          Length = 282

 Score =  132 bits (318), Expect = 4e-31
 Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 1/172 (0%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           ++LRVL RPD + L  ++  LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R  VS L
Sbjct: 96  LTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSAL 155

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           +R  L+ RAA+FNI+LDDV++T L++G E++                     RA+QER+ 
Sbjct: 156 VRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVEKKQVAQQEAERSRFLVARAEQERRA 215

Query: 420 KIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLP 268
            IV+                    G ++LR+I AA+ I+  +A+S N  ++P
Sbjct: 216 AIVRAEGESEAARLISEATAAAGTGLIELRRIEAAKEIAGELARSPNVSYIP 267


>04_04_0143 - 23091613-23092467
          Length = 284

 Score =  128 bits (309), Expect = 5e-30
 Identities = 70/172 (40%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           ++LR+L RPD   L T++  LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R  VS L
Sbjct: 95  LTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTERPHVSAL 154

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           +R  L+ RA +FNIILDDV++T LS+G E++                     +A+QER+ 
Sbjct: 155 VRDALIRRAREFNIILDDVAITHLSYGIEFSQAVEKKQVAQQEAERSKFLVAKAEQERRA 214

Query: 420 KIVQ-XXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLP 268
            IV+                    G ++LR+I AA+ I+  +A+S N  ++P
Sbjct: 215 AIVRAEGESESARLISEATAAAGTGLIELRRIEAAREIAAELARSPNVAYVP 266


>03_06_0437 -
           33912326-33912520,33912870-33912998,33913147-33913317,
           33913877-33913993,33914150-33914800
          Length = 420

 Score =  116 bits (280), Expect = 2e-26
 Identities = 58/91 (63%), Positives = 73/91 (80%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I LRVL RP    L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS  
Sbjct: 259 IGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSRE 318

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYT 508
           IR+ L ERA++FNI LDDVS+T LSFGKE+T
Sbjct: 319 IRKILTERASNFNIALDDVSITSLSFGKEFT 349



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = -3

Query: 357 NPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMINLQDPTFDDLSEK 211
           NP +L LR+I AA+ IS  +A+S N+V+L    L++ LQ    D  ++K
Sbjct: 372 NPAFLALRQIEAAREISHTMARSNNKVYLDSKDLLLGLQQLNVDSKNKK 420


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = -3

Query: 774 LRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 616
           L VL RP    L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI  R+
Sbjct: 380 LGVLTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428


>09_04_0633 -
           19123930-19124009,19124240-19124344,19124453-19124543,
           19124647-19124709,19126318-19126368,19126878-19126962,
           19127102-19127283,19128493-19128582
          Length = 248

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
 Frame = -3

Query: 735 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 583
           T+   +G   D+K    + N+  K VV   +  +L+    +         VS   R+E+V
Sbjct: 51  TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110

Query: 582 ERAADFNIILDDVSLTELSFGKE 514
           ERAA  +I++  +   +LS+  E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,015,157
Number of Sequences: 37544
Number of extensions: 273633
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)