Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J03
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial p...   191   6e-49
AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial...   119   3e-27
Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>U28940-7|AAA68353.2|  294|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 2 protein.
          Length = 294

 Score =  191 bits (465), Expect = 6e-49
 Identities = 97/190 (51%), Positives = 129/190 (67%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I LRVL RP+   L  +YR LG +++E+VLPSICNEVLK VVAKFNASQLITQRQQVS+L
Sbjct: 103 IGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSML 162

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
           +R+ L+ERA DFNIILDDVSLTEL+F  +Y+                    ERAKQ++Q+
Sbjct: 163 VRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQKQE 222

Query: 420 KIVQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPGNSLMINLQ 241
           KIVQ                 +PG+LKLRKIRAAQ I+R++++S N+ +LP   LM+N+ 
Sbjct: 223 KIVQAEGEAESAKLLGEAMKNDPGFLKLRKIRAAQKIARIVSESGNKTYLPTGGLMLNIA 282

Query: 240 DPTFDDLSEK 211
           D  + ++++K
Sbjct: 283 DTDYLNVTDK 292


>AC087079-9|AAK27865.1|  275|Caenorhabditis elegans Mitochondrial
           prohibitin complexprotein 1 protein.
          Length = 275

 Score =  119 bits (286), Expect = 3e-27
 Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 2/182 (1%)
 Frame = -3

Query: 780 ISLRVLXRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLL 601
           I+LR+L RP  + L  +Y  +G DY E+VLPSI NEVLK+VVA+F+A ++ITQR+ VS  
Sbjct: 93  ITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQR 152

Query: 600 IRRELVERAADFNIILDDVSLTELSFGKEYTXXXXXXXXXXXXXXXXXXXXERAKQERQQ 421
               L ERAA F ++LDD+++T L+FG+E+T                    E+A+Q +  
Sbjct: 153 ASVALRERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMKIA 212

Query: 420 KI-VQXXXXXXXXXXXXXXXXMNPGYLKLRKIRAAQSISRMIAQSQNRVFLPGN-SLMIN 247
            +                      G ++LRKI AA+ I+  +A+++N  +LPGN   ++N
Sbjct: 213 AVTTAEGDAQAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQTLLN 272

Query: 246 LQ 241
           LQ
Sbjct: 273 LQ 274


>Z73971-12|CAC42267.1|  718|Caenorhabditis elegans Hypothetical
          protein T11A5.6 protein.
          Length = 718

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 36 LQMQSFNCLHCALLNNP 86
          ++M ++NCL+C L+N+P
Sbjct: 1  MEMTAWNCLYCTLINDP 17


>Z72515-6|CAA96686.2|  718|Caenorhabditis elegans Hypothetical
          protein T11A5.6 protein.
          Length = 718

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 36 LQMQSFNCLHCALLNNP 86
          ++M ++NCL+C L+N+P
Sbjct: 1  MEMTAWNCLYCTLINDP 17


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,213
Number of Sequences: 27780
Number of extensions: 251924
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)