Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J02
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    75   7e-15
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   4.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   6.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   6.0  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   7.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.9  

>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 41/87 (47%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
 Frame = -1

Query: 632 VQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGD----DEIVIQGDV 465
           V +    R K+K VT V GL  F I+ K AAK    KFA G+SVT      DEIV+QGD+
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 464 KDDLFDIIPEKWPEIDEDSIEDLGDQK 384
             D+FD I EK+ E+ ED+I+ + D K
Sbjct: 159 NYDIFDFILEKFKEVPEDNIKIVEDTK 185


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 296 IVLQFIFDLPHFWQVYCYFSRKQKESLISNVDE 198
           IV++FI D P  W ++C+     +  L++   E
Sbjct: 465 IVIRFIADNPGAWVIHCHIEWHMESGLLATFIE 497


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 293  VLQFIFDLPHFWQVYCYFSRKQKESLISN 207
            VLQ  F   H W  Y Y   K +E LI N
Sbjct: 1360 VLQSRFQRDHLWSHYLYQPLKGEEDLIIN 1388


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 553 RSISKVLNPDTTVTDFFLPRGARDTCTNLGTSSFFLDFN 669
           RS  +V+NP+ +VTD   P G  +     G SSF    N
Sbjct: 223 RSRKRVVNPECSVTD--TPYGKLNNVIGEGASSFIRVIN 259


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 3/22 (13%)
 Frame = -1

Query: 695 RQKRGGK---GMLKSKKKEDVP 639
           + K+G K   GM+K++KKED+P
Sbjct: 230 KYKKGAKLEEGMVKNEKKEDIP 251


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 541 QNF-LAQNLLVDLQSQEMMR**FRVMLKMIFLISYLKSGQKLMKTV-LKILVIKKGSVPY 368
           Q+F +A+   +DL+ +   R      LK IF +  L+  + +      K+  +  GSV  
Sbjct: 568 QSFKIAERKALDLKKEVAEREKRIQRLKEIFSVKSLEFREAVFSLFGYKLDFMPNGSVRV 627

Query: 367 TKRRLHQDNTLFLF 326
           T     +DNT F+F
Sbjct: 628 TSTYSREDNTAFIF 641


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 414  FINFWPLFRYDIKKIIFNITLN 479
            F+NF PLFR    K+I+N+ LN
Sbjct: 965  FVNFVPLFR----KVIWNLLLN 982


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 463  KMIFLISYLKSGQKLMKTVLKILVIKKGS---VPYTKRRLH 350
            K  FL S LKS  + ++  ++ L  KKG    +P++K+  H
Sbjct: 1338 KRAFLDSQLKSYNEYIEQAMETLQSKKGKKKLIPFSKQYFH 1378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,831
Number of Sequences: 5004
Number of extensions: 52948
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)