Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J02
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical...   138   5e-33
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF077537-9|AAC26278.1|  204|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    27   9.8  

>AL117202-17|CAB55081.1|  192|Caenorhabditis elegans Hypothetical
           protein Y47D3A.21 protein.
          Length = 192

 Score =  138 bits (333), Expect = 5e-33
 Identities = 71/116 (61%), Positives = 84/116 (72%), Gaps = 11/116 (9%)
 Frame = -1

Query: 695 RQKRGGKGMLKS-----------KKKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLK 549
           +QKRGGKG               KKK   P+ V + R PRGKK SVTV+ GL+TFDIDLK
Sbjct: 78  KQKRGGKGSKTGAAAAQAAASGGKKKGGGPQKVTLQREPRGKK-SVTVIKGLATFDIDLK 136

Query: 548 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKR 381
           VA+K F  KFACGSSVTG DEIVIQGDVKDDL D+IPEKW ++ ++ I+DLGD+KR
Sbjct: 137 VASKLFAQKFACGSSVTGADEIVIQGDVKDDLLDLIPEKWKQVTDEQIDDLGDKKR 192


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 228 LFSRKITIYLPKMR*IKNKL*YYYFEMTIFNIIKRNNVLSWCNLLL 365
           +F + I  YL KM+   N   +  F  T+ +  K NN+L WC L L
Sbjct: 490 VFKQGIRAYLQKMQ-YSNANDFDLFS-TLTDTAKSNNILDWCGLPL 533


>AF077537-9|AAC26278.1|  204|Caenorhabditis elegans Hypothetical
           protein F16G10.10 protein.
          Length = 204

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 308 HFKIIVLQFIFDLPHFWQVYCYFS 237
           +F   +  F+FD PH  Q+YC F+
Sbjct: 30  NFLFCISNFVFDWPHGSQMYCQFA 53


>AF014940-1|AAB63933.1|  143|Caenorhabditis elegans Hypothetical
           protein W02D7.3 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 141 PTKKIVKANHLLLSCLLQQFT*SSHVFCTQFYNKTRIVIIN 19
           PTK  V   + L  C L  F  +  +F   FY   RIV+I+
Sbjct: 98  PTKSAVSRRNYLAGCFLCVFFAAPIIFLVIFYMIPRIVVID 138


>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 681 WQGYVKIQEERRCSQVSAGISCSSGQEEISHSRVWI 574
           + G VK+  E  C+QV+  ISC    E +S  RV+I
Sbjct: 59  FSGSVKV--EITCNQVNGSISCLFEDEHMSVGRVYI 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,774,885
Number of Sequences: 27780
Number of extensions: 292331
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)