Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_J02
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.4  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 110 YSFHVCYNSLPNQAMSFAHNFTIKQ 36
           Y++  CYN  PNQ  +     T+++
Sbjct: 216 YAYPYCYNLTPNQPSAQCEATTMQE 240


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 329 LYNVKNCHFKIIVLQFIFDLPHFWQVY 249
           L+N+       ++L   F+L  FWQ Y
Sbjct: 72  LFNLAVSDLLFLILGLPFELSVFWQQY 98


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 168 NFNLLLYLRPTKKIVKANHLLLSC 97
           +F L +Y   T   +   HL+LSC
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSC 186


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 168 NFNLLLYLRPTKKIVKANHLLLSC 97
           +F L +Y   T   +   HL+LSC
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSC 186


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 168 NFNLLLYLRPTKKIVKANHLLLSC 97
           +F L +Y   T   +   HL+LSC
Sbjct: 214 HFALRIYRNGTVNYLMRRHLILSC 237


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 168 NFNLLLYLRPTKKIVKANHLLLSC 97
           +F L +Y   T   +   HL+LSC
Sbjct: 163 HFALRIYRNGTVNYLMRRHLILSC 186


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 185 YLQKTHRH*KLKTLFVF*KNNN 250
           Y+Q   +H KL   F+F + NN
Sbjct: 116 YVQPPTKHQKLDQKFIFPQENN 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,468
Number of Sequences: 438
Number of extensions: 3594
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)