Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I23
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.70 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   2.1  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   2.8  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    24   4.9  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   4.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   4.9  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    24   6.5  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    23   8.6  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.6  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 178 YKNNYYFINNLCIRIYKSQRSQKSTINQTSCISLCPDD 291
           Y+ NY   N LC+  ++S+  ++   +Q    +L PD+
Sbjct: 4   YRFNYLRFNKLCVSFFRSKFDKRPFASQKFPENLVPDN 41


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 7/34 (20%), Positives = 20/34 (58%)
 Frame = -2

Query: 139 IFIVSTKLNDYDYFLQSIIFLYFFFFNKLCIIQF 38
           +FI ++   +  Y  + ++ +  FFF+ +C++ +
Sbjct: 432 VFIFASSTKEQHYASRLVVGIVHFFFSLVCVVYY 465


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 209 FAYGYTSHNDHKNQQLIKR---LVSHSVPMTSSEAIK 310
           F + YT + DHK   +I     L+  ++P+  S A+K
Sbjct: 323 FLWEYTDNRDHKGPLIISHIYLLIGCAIPIWLSNALK 359


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 154 LCRFTIFIVSTK-LNDYDYFLQSIIFLYFFFFNKLCI 47
           LC  +IF V  + +N + +   +I+FL+F F ++L +
Sbjct: 77  LCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKSELIL 113


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 145 FTIFIVSTKLNDYDYFLQSIIFLYFFFFNKLCIIQFVM 32
           F+I+  +   ND  Y+L  I   + F   KL +++F+M
Sbjct: 333 FSIWTATECNNDCGYYLPGIPAYHGFSGAKLVLMEFIM 370


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 121 KLNDYDYFLQSIIFLYFFFFNKLCIIQF 38
           +L D+D +L  ++FL F F +K   I+F
Sbjct: 681 ELVDFDKYLVELLFLSFAFKDKFDWIRF 708


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 220 IYKSQRSQKSTINQTS-CISLC 282
           IYKSQR +K     TS C++ C
Sbjct: 63  IYKSQRFEKGIAEPTSICVNNC 84


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 171 VYNVFDYVDLQFLLY 127
           +YN  D ++LQFLLY
Sbjct: 62  MYNAADALNLQFLLY 76


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 85  IFLYFFFFNKLC 50
           I++YFFF++ LC
Sbjct: 81  IYIYFFFYSFLC 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,217,828
Number of Sequences: 5004
Number of extensions: 21281
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)