Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_I17
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 207 1e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 4e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 98 1e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 79 7e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 60 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 52 5e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 1e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 3.8
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 6.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 6.6
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 8.8
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 207 bits (505), Expect = 1e-54
Identities = 93/106 (87%), Positives = 100/106 (94%)
Frame = -2
Query: 567 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 388
E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKI 329
Query: 387 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 250
+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 330 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99.1 bits (236), Expect = 4e-22
Identities = 44/106 (41%), Positives = 73/106 (68%)
Frame = -2
Query: 567 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 388
E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKI 334
Query: 387 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 250
A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 335 YASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 97.9 bits (233), Expect = 1e-21
Identities = 46/98 (46%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Frame = -2
Query: 564 SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKI 388
S G+HE VY SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I +
Sbjct: 321 SVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHT 380
Query: 387 I-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 277
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 381 AETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -2
Query: 558 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 379
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 378 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 253
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 78.6 bits (185), Expect = 7e-16
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Frame = -2
Query: 567 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------A 412
E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGD 329
Query: 411 PSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 277
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 330 PARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -2
Query: 549 ETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI---------- 400
E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 399 ----KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 259
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.4 bits (120), Expect = 5e-08
Identities = 31/101 (30%), Positives = 48/101 (47%)
Frame = -2
Query: 558 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 379
GI E V S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P
Sbjct: 299 GIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEP 358
Query: 378 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 256
+ W S + L + I++ EY E G I+ RK
Sbjct: 359 SDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/98 (24%), Positives = 50/98 (51%)
Frame = -2
Query: 567 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 388
+ GI E + + + + ++ ++ L +N +++GG PG+ R+++E+T++ P I +
Sbjct: 611 DQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINV 670
Query: 387 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 274
W G S + F+ +++EEY E GP
Sbjct: 671 FRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 504 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 334
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 333 SLSTFQQMWISKEEYDESGPGIVHRK 256
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 357 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 256
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 432 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 322
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 582 LSWVWESCGIHETVY-NSIMKCDVD---IRKDLYANTVMSGGTTMYPGIADRMQKEI 424
L+WV+ I + I+ +D I LY++ S T + GI DR++K +
Sbjct: 505 LTWVYNKSHIELPLLPTDILSKSIDNQTIYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 194 ELGRAQHHTAPGSRGRAA*KHLRWT 268
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 553 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 425
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 406 DHQDQDHRSPREEVLRMDRWIHPG 335
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 140 NLTPSILM*FIVKFYINLISFLFLLYXTGSLWISTL 33
N+ P + F+V+F+I + LF++Y + + + TL
Sbjct: 43 NILPKGNLGFLVEFFIFCLIPLFVIYVSSKVGVFTL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,249
Number of Sequences: 5004
Number of extensions: 41203
Number of successful extensions: 120
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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