Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I14
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   2.6  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.1  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 524 TFSDFLKCNINKTYLNMGSNYTFPGVGMATLYYVDIDKQSSIL 396
           TFSDF   N++K    M + Y  PG  +     +D  +Q   L
Sbjct: 288 TFSDFWIYNVDKDLWIMENEYGIPGERVCHRMVIDTSQQKLYL 330


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
 Frame = +3

Query: 237 NILQDFSSYKRINIT-----RN------VTQLNAPRQRFRKHFALHYAFIEYE 362
           N+  + S Y R+N T     RN      ++ +N+  +RF +HF   Y F+  E
Sbjct: 90  NVAYEASQYPRMNATFMVLARNSDLDGVLSSMNSIERRFNRHFKYPYVFLNDE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,191
Number of Sequences: 5004
Number of extensions: 46555
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)