Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_I13
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 146 3e-36
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 138 7e-34
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 28 1.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 4.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.2
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 8.2
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 8.2
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 146 bits (354), Expect = 3e-36
Identities = 73/119 (61%), Positives = 85/119 (71%)
Frame = -2
Query: 357 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 178
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 177 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKA 1
P+ SE+AMKKIED+NTLVF VH ANK IK AVKKLY ++ K+NTLIRP+G KKA
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKA 121
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 138 bits (334), Expect = 7e-34
Identities = 69/119 (57%), Positives = 82/119 (68%)
Frame = -2
Query: 357 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 178
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 177 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKA 1
P+ SE+AMKKIED+NTLVF VH ANK IK AV+KLY + K+NTLIRP+G KKA
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKA 121
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 85 MVLVCTCMDNKDQGVVIFNLLHCCFRREREFNDVVGIHAISLRQ 216
MV++ C+D KD + + C + + EF DV+ + + Q
Sbjct: 787 MVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQ 830
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 193 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 366
+ A + R P R P+ RF+ L S++ + + PY+ P F S + + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255
Query: 367 YFFLSLNPSL 396
S PSL
Sbjct: 256 RRTKSATPSL 265
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 457 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 368
S+NCQ + +++C EA D D G K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = -2
Query: 198 MDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINV 46
+ A+++ +F E ++ +DN T I H + ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 218 LCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSIQVQTSTISRLQSRNSM 57
+ L IA+ T SL + K+ R + T PW +LS Q I ++S+ +
Sbjct: 335 IVLESIAFESTDSLTVV--WKESTRTVFETVPWRILSSQATNGLIELVRSKTRL 386
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 260 RRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLKQQ*RRLKITTPWSLLSIQ 102
RR+ LL +GSL L ++ L+ ++QQ R+ T W LS++
Sbjct: 545 RRIRLLYDSLPKGSLLLLYTGTGNPIEMSKLNAIRQQFRKEYQTKKWDELSVK 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,274
Number of Sequences: 5004
Number of extensions: 38476
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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