Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I09
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    27   0.84 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   1.5  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    24   7.8  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 399 REAWLWNVCQLGCGISSCFEVTQRTTSAKNVQIHDSIPCFGL 274
           R A L +VC LGCGI++ +     T   K     DS+  FGL
Sbjct: 167 RLAPLDSVCLLGCGITTGYGAATITADIKE---GDSVAVFGL 205


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = -1

Query: 256 PNSLSHPAGVERGL----PSPALCPAGTMKPWRLFINLFRMKLKNSCYAR 119
           P+S   P G  RG     P P LC  G   P    +  F +  K S +AR
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCTATVEKFCLCGKESIHAR 324


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 376 VSVRVWDQ*LFRSHSKNYLSQKCTNSRFYSLFW 278
           V+ R+W+Q L   H KN       + R   L W
Sbjct: 673 VNSRIWEQYLQHMHDKNTTKMGNISFRITHLVW 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,729
Number of Sequences: 5004
Number of extensions: 35663
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)