Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I08
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   3.6  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   4.8  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   4.8  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 150 CCNRCCRECSQLRKCCSRCCTGCSQLRK--CCNRCCTGC 260
           CC++     S+   CCS+    C   +K  CC++   GC
Sbjct: 225 CCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 198 SRCCTGCSQLRKCCNRC 248
           ++ C GC++ + CC  C
Sbjct: 67  TQICVGCARYKNCCQSC 83


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 156 NRCCRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCSQLRRC*G 284
           +R C +C + +  C R    CSQ  KC  R    C   + C G
Sbjct: 96  SRFCEKCQEYK--CDRS-HHCSQCNKCILRMDHHCMWFKNCVG 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,591
Number of Sequences: 5004
Number of extensions: 11677
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)