Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I07
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    65   7e-12
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.31 
SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    29   0.71 
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   6.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.7  

>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 29/64 (45%), Positives = 42/64 (65%)
 Frame = -1

Query: 612 EKYRKRKXGSRLVRKAIQAMINDTADEVVLXTXITNKPALKLYENLGFVRDKRLFRYYLN 433
           ++YR +   ++L + ++  M N  A E+VL T + N+ A+  YE LGF R KRL+RYYLN
Sbjct: 79  KEYRGQGIATKLTQASLDVMKNRGAQEIVLETEVDNEAAMSFYERLGFCRYKRLYRYYLN 138

Query: 432 GVDA 421
           G DA
Sbjct: 139 GTDA 142


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 216 VIHCM*FIIIFFLKYCLMIKSIVTKILKSIENLKTQIEKFF*SLILFMI 70
           V + + FII+F   +    KSI+ K+L S+  L T I  FF S  + ++
Sbjct: 48  VFNTVVFIIVFLTGWAA--KSIIVKLLPSLWRLSTLIPSFFASFFMSLL 94


>SPBC1271.07c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -1

Query: 603 RKRKXGSRLVRKAIQAMINDTADEVVLXTXITNKPALKLYENLGFVRDKRLFRYYLNGV 427
           R  K G  LV++ IQ         +VL T  T  PA++LY++ GF   K    YY N +
Sbjct: 96  RGLKLGVLLVKEIIQYSEKLGYSSMVLDTLDTLLPAVRLYKSFGF---KTTEPYYHNPI 151


>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 555 MINDTADEVVLXTXI-TNKPALKLYENLGF 469
           M +D ADE  +   +  +K A K+YE+LG+
Sbjct: 171 MAHDLADEYQIPCFLMASKMAFKMYEHLGY 200


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 4   LQNXLEI*DSSLNLKKITSIE 66
           LQ  ++I D++ N+KKIT++E
Sbjct: 332 LQGSIDIFDAANNMKKITTVE 352


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = -3

Query: 337 AVLSIYIKYYCLYSYLLCNILPSMWI*PNVVFISHFNSKSCDTLYVIYYNFFSQILFNDK 158
           A   +Y+KY   + + LCNI+P   + P+ V +       C+TL  +      +    + 
Sbjct: 466 ATYFLYMKYVHPFIFSLCNIIP---LNPDEV-LRKGTGTLCETLLTV------EACTKNI 515

Query: 157 IYCNKNIEINRKF 119
           I  NK+++ ++KF
Sbjct: 516 ILPNKHVDASQKF 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,924
Number of Sequences: 5004
Number of extensions: 41652
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)