Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_I07
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.4  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   4.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   4.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -3

Query: 241 ISHFNSKSCD---TLYVIYYNFFSQILFNDKIYCNKNIEINRK 122
           ISHF + SCD    +Y ++ N     L    ++  K+I+ N +
Sbjct: 574 ISHFINHSCDPNLAVYGVWINCLDPNLPKLALFATKDIKQNEE 616


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 172 LFNDKIYCNKNIEINRKFKNTN*KIFLVTNFVYDFPL 62
           L N+ I+ N N + N    N N K++   N++   P+
Sbjct: 85  LSNNTIH-NNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 172 LFNDKIYCNKNIEINRKFKNTN*KIFLVTNFVYDFPL 62
           L N+ I+ N N + N    N N K++   N++   P+
Sbjct: 85  LSNNTIH-NNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 172 LFNDKIYCNKNIEINRKFKNTN*KIFLVTNFVYDFPL 62
           L N+ I+ N N + N    N N K++   N++   P+
Sbjct: 85  LSNNTIH-NNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 172 LFNDKIYCNKNIEINRKFKNTN*KIFLVTNFVYDFPL 62
           L N+ I+ N N + N    N N K++   N++   P+
Sbjct: 85  LSNNTIH-NNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,179
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)