Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_I04
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin ... 229 1e-60
Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical pr... 200 8e-52
AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical... 50 2e-06
Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein... 29 2.4
Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein... 29 2.4
AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical ... 28 5.5
AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical ... 28 5.5
AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical ... 27 9.6
>U37429-15|AAN63412.1| 195|Caenorhabditis elegans Peroxiredoxin
protein 2 protein.
Length = 195
Score = 229 bits (560), Expect = 1e-60
Identities = 105/145 (72%), Positives = 120/145 (82%)
Frame = -1
Query: 694 VCPTEIIAXSEKADEFRKIGCEVXGASTXSHFTHLAWINTPRKQGGLGPMNIPLISDKSH 515
VCPTEIIA S++A+EF+ I V AST S F+HLAWIN PRK GGLG MNIP+++D +H
Sbjct: 48 VCPTEIIAFSDRAEEFKAINTVVLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNH 107
Query: 514 RISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHG 335
+ISRDYGVL E+ GI FRGLFIID QNLRQITINDLPVGRSV+ETLRLVQAFQF +KHG
Sbjct: 108 QISRDYGVLKEDEGIAFRGLFIIDPSQNLRQITINDLPVGRSVDETLRLVQAFQFVEKHG 167
Query: 334 EVCPANWRPGAKTIKPDTKAAQEYF 260
EVCPA W PG+ TIKP K +QEYF
Sbjct: 168 EVCPAGWTPGSDTIKPGVKESQEYF 192
>Z32683-2|CAA83619.1| 226|Caenorhabditis elegans Hypothetical
protein R07E5.2 protein.
Length = 226
Score = 200 bits (488), Expect = 8e-52
Identities = 86/145 (59%), Positives = 114/145 (78%)
Frame = -1
Query: 694 VCPTEIIAXSEKADEFRKIGCEVXGASTXSHFTHLAWINTPRKQGGLGPMNIPLISDKSH 515
VCPTEIIA ++A+EFR +G EV S SHF+HLAW+NTPRK GGLG M+IPL++D +
Sbjct: 77 VCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNK 136
Query: 514 RISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHG 335
+I+ +GVLD+E+G+ +RGLF+ID +R T NDLPVGRSV+ETLR+++AFQF+DKHG
Sbjct: 137 KIADSFGVLDKESGLSYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHG 196
Query: 334 EVCPANWRPGAKTIKPDTKAAQEYF 260
EVCPA+W + TIKP ++EYF
Sbjct: 197 EVCPADWHEDSPTIKPGVATSKEYF 221
>AC024761-15|AAM97968.1| 231|Caenorhabditis elegans Hypothetical
protein Y38C1AA.11 protein.
Length = 231
Score = 50.0 bits (114), Expect = 2e-06
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Frame = -1
Query: 694 VCPTEIIAXSEKADEFRKIGCEVXGASTXSHFTHLAW---INTPRKQGGLGP-MNIPLIS 527
VC TE+ + A EFRK ++ S S TH W IN+ + G + +I+
Sbjct: 43 VCTTELAELVKLAPEFRKRHVQILAISIDSSETHRDWAKDINSVAQLSNCGSHLPFEIIA 102
Query: 526 DKSHRISRDYGVLDEET----GIPF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLV 365
D I + G++D + GI R + + + L+ + GR+ E LR+V
Sbjct: 103 DTDRSICTELGMIDPDEMNSEGICLSARAVMLFGPDKKLKSKILYPATFGRNFVEILRMV 162
Query: 364 QAFQFTDKHGEVCPANWRPGAKTI 293
Q K PANW G I
Sbjct: 163 DGVQLGTKAPVATPANWIAGDNVI 186
>Z46935-4|CAA87051.1| 270|Caenorhabditis elegans Hypothetical
protein M106.5 protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -1
Query: 598 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 419
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 418 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 329
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z34533-1|CAA84302.3| 730|Caenorhabditis elegans Hypothetical
protein B0285.1 protein.
Length = 730
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 548 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 429
HE S K++ + L R G GHS+ T H R +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664
>Z18854-1|CAA79306.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -1
Query: 598 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 419
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 418 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 329
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>Z18806-1|CAA79270.1| 270|Caenorhabditis elegans capping protein
beta subunit protein.
Length = 270
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/90 (24%), Positives = 44/90 (48%)
Frame = -1
Query: 598 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 419
T + W+ T + G+ MN+ + H + D + D+ T + G I D + +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225
Query: 418 TINDLPVGRSVEETLRLVQAFQFTDKHGEV 329
TIN++ G+ T +++ + T+K E+
Sbjct: 226 TINEIYFGK----TKKVMSDLRSTEKQSEL 251
>AL008868-3|CAH04724.1| 362|Caenorhabditis elegans Hypothetical
protein C53C7.1b protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 436 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 302
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
>AL008868-2|CAA15513.1| 365|Caenorhabditis elegans Hypothetical
protein C53C7.1a protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 436 QNLRQITIND-LPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 302
Q L+ I+ N + VG SV ++ + QF + GE C NW P A
Sbjct: 142 QALKMISFNSAISVGLSVPLFMKQ-ELMQFRNYCGEYCSENWGPDA 186
>AF039041-8|AAB94189.2| 448|Caenorhabditis elegans Hypothetical
protein W03F8.2 protein.
Length = 448
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 445 DDKQNLRQITINDLPVGRSVEETLRL-VQAFQFTDKHGEVCPANWRPGAKTIK 290
DDK+ + + N+ PV VEE + + V+A Q TD E+ +P K K
Sbjct: 94 DDKKEVEEKKENEKPVDVKVEEKVMVKVEATQNTDNSQELKAPEEKPKKKKKK 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,050
Number of Sequences: 27780
Number of extensions: 252691
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -