Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H21
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 405 SGQLDIIVAYPLTEKFLANLNFSAVVEYKFAPRNI 301
           SG+ D    YPL      N  F AV+ Y   P ++
Sbjct: 61  SGEYDRTKNYPLDVDQWHNKTFLAVIRYNGVPSSL 95


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 259 GLPDVTSDVAVHS-PDVPRGKLVLDHSG-EVQVS 354
           G  D + ++ V   P+VP G  VLD SG  VQ+S
Sbjct: 862 GSDDTSINMIVQEVPEVPYGLKVLDKSGRSVQLS 895


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -2

Query: 476 WT--I*RGPSPRC*PNCSLTTRSCSI 405
           WT  I RGP+ R       TTR CS+
Sbjct: 74  WTPFIERGPANRMYIEIKFTTRDCSL 99


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 344 FKLARNFSVRGYATMMSSC 400
           FK+A  F   GYAT + SC
Sbjct: 91  FKIAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 344 FKLARNFSVRGYATMMSSC 400
           FK+A  F   GYAT + SC
Sbjct: 144 FKIAPIFKGIGYATCVLSC 162


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 405 SGQLDIIVAYPLTEKFLANLNFSAVVEYKFAPRNI 301
           SG+ D    YP       N  F AV+ Y   P ++
Sbjct: 60  SGEYDYTKNYPFDVDQWHNKTFLAVIRYDGVPSSL 94


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 296 LQMFLGANLYSTTAEKFKLARNFSVRGYATMMSSC 400
           +++ LG  L       FK+A  F   GYA  + SC
Sbjct: 37  MELALGQMLTVGGLGVFKIAPLFKGIGYAAAVMSC 71


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 471 DLTRSVAPLLAKLLSHYPIMFYSGQLD 391
           D+T+   P  ++L+  +PI+   G +D
Sbjct: 129 DITKRPLPNESQLIKRHPIVTIMGHVD 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,061
Number of Sequences: 438
Number of extensions: 3109
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)