Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H20
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   204   8e-54
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.69 
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   4.9  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   6.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   6.4  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   8.5  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  204 bits (499), Expect = 8e-54
 Identities = 83/137 (60%), Positives = 111/137 (81%)
 Frame = -2

Query: 478 FVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPVDTL 299
           F++S SA+ADVLA++K E+ L++IPEGK++  KW+GKP+FIRHRT +EI    +V + TL
Sbjct: 91  FLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTL 150

Query: 298 RDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAP 119
           RDPQ D  R Q P+WLV+IGVCTHLGCVP+  AG++GG++CPCHGSHYD SGRIR+GPAP
Sbjct: 151 RDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDISGRIRRGPAP 210

Query: 118 LNLEVPPHTFMDEGLLV 68
           LNL +P +TF    +++
Sbjct: 211 LNLAIPAYTFEGSKIII 227


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 420 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINVPKTPSGWS 247
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 246 *SAYVPT 226
            S  +P+
Sbjct: 588 PSIAIPS 594


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 475 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 308
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 326 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 460
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 209 YRHASQVGTYADHDQPLGVL 268
           +++ S  G +A+HD P+G+L
Sbjct: 150 FQNTSSKGKHAEHDSPIGLL 169


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 229 HLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGP 125
           H  CV +A+      YYC    S  D S +++  P
Sbjct: 46  HASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,849
Number of Sequences: 5004
Number of extensions: 55392
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)