Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H19
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    32   0.077
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.2  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    27   3.8  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -1

Query: 656 NVNQSHLSYLRNEVDLANYPELSYNALHCS-HARLLSSLSYLANTIHITASDRYMFPHVV 480
           N N+ ++   +N + L  + E+    L C  H      L  + N   + + +RY+F  + 
Sbjct: 46  NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLFVRLF 105

Query: 479 VKKRNSYIK 453
           ++KRN + +
Sbjct: 106 MRKRNKWFR 114


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 33  VII*RLILNKFLLVLIRLSVSNFNATPKHIANVHIVWILHSFLVVRFVSVTIEMCELSRD 212
           VI  + +L K L   +  ++ +  +  K I +VH+V ++      RF+ + +E C L   
Sbjct: 39  VISIKSVLTKKLTKKLLENLESEISILKEIRHVHVVELIDCIKAGRFIHLVMEYCSLGDL 98

Query: 213 QIF*MRHPRRNS 248
             F  +  + NS
Sbjct: 99  SYFIRKREKFNS 110


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 338  LEFGHNQPFYYLIIANQSSRYVAQENLSALTVPPRMPHLE 219
            L F   + ++ LI+A +   Y +   LS + +PP  P+LE
Sbjct: 931  LRFYAIKAWFSLILATKEPEYSSIAGLSLVILPPLFPYLE 970


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 85  SPYLTSTQLRNILLMCISSGYSIR 156
           S +L   + R +L++ ISSGYSIR
Sbjct: 324 SYFLNPQKARYMLMLAISSGYSIR 347


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 85  SPYLTSTQLRNILLMCISSGYSIR 156
           S +L   + R +L++ ISSGYSIR
Sbjct: 324 SYFLNPQKARYMLMLAISSGYSIR 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,310
Number of Sequences: 5004
Number of extensions: 62772
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)