Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_H19
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0481 + 4229084-4229262,4231083-4231148,4233138-4233255,423... 42 5e-04
01_06_0814 - 32171148-32171303,32171383-32171423,32171645-321716... 38 0.011
06_03_0339 - 19687749-19690805 32 0.43
05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275 29 5.3
01_04_0054 - 15456668-15459691 29 5.3
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 28 7.0
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 28 9.3
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580... 28 9.3
>08_01_0481 +
4229084-4229262,4231083-4231148,4233138-4233255,
4233620-4233711,4233805-4233883,4233959-4234052,
4234296-4234408,4234811-4234856,4235364-4235404,
4235492-4235647
Length = 327
Score = 41.9 bits (94), Expect = 5e-04
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Frame = -1
Query: 458 IKYA--VGMICTHKKHKYTGIIRGWDLIW--AADWKEHGEALNRLEFGHNQPFYYLIIAN 291
+KYA +G HK H Y +I G D + + W E N L G NQPFY +++
Sbjct: 194 VKYAFRLGQKVRHKVHGYRAVICGMDHVCCESKSWMETANVEN-LSKGPNQPFYQVLVDV 252
Query: 290 QSS-----RYVAQENLSALTVPPR----MPHLEDLIAREFT 195
+ YVA+ENL+ +P + P++E L E T
Sbjct: 253 YADPELLVAYVAEENLAEAEIPEKGRFDHPYIEFLFFGEDT 293
>01_06_0814 -
32171148-32171303,32171383-32171423,32171645-32171690,
32172100-32172212,32172459-32172552,32172628-32172706,
32172808-32172899,32172973-32173032,32173263-32173409
Length = 275
Score = 37.5 bits (83), Expect = 0.011
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Frame = -1
Query: 470 RNSYIKYAVGMICTHKKHKYTGIIRGWDLIW--AADWKEHGEALNRLEFGHNQPFYYLII 297
+N + +G HK H Y +I G D + + W E N L G NQPFY +++
Sbjct: 140 QNVEYAFRLGQKVRHKVHGYRAVICGMDPVCCESKSWMETANVEN-LSKGPNQPFYQVLV 198
Query: 296 ANQSS-----RYVAQENLSALTVPPR----MPHLEDLIAREFT 195
+ YVA+ENL+ + + P++E L E T
Sbjct: 199 DVYADPELLVAYVAEENLAEAEISEKGRFDHPYIEFLFFGEDT 241
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 515 TASDRYMFPHVVV----KKRNSYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKEH 357
TA + MF H + K RNSY Y +K + + +GWD+ W+AD +H
Sbjct: 567 TAKESSMFSHAIFYEKNKTRNSYEIYP-------RKGEVWALFKGWDIDWSADADKH 616
>05_03_0279 - 11547086-11547246,11547591-11547807,11549132-11549275
Length = 173
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 346 RASPCSFQSAAQMRSQPRI-IPVYLCFL*VH-IIPTAYLM*LFRFLXXXXGNIYLSDAVM 519
RA+PC +S+A + QP + YLCF H + TAY L G L ++
Sbjct: 7 RATPCPTESSAPVHGQPESQLLYYLCFNKQHGHVKTAYFQGKVALL-LQVGREALPPDIV 65
Query: 520 WMVLAKYDRDD 552
++A DR +
Sbjct: 66 AKIIAARDRKE 76
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 518 ITASDRYMFPHVVV----KKRNSYIKYAVGMICTHKKHKYTGIIRGWDLIWAADWKEH 357
+ + D MF H+V +KR+SY Y +K + + +GW + W++D +H
Sbjct: 578 VVSQDALMFSHIVSWVKGRKRSSYEIYP-------RKGEVWALYKGWSMQWSSDADKH 628
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 476 KKRNSYIKYAVGMICTHKKHKYTGIIRGWDL 384
+K+ SYI++A+ HK + I+R WD+
Sbjct: 493 EKKQSYIRHAIREYNIHKTLVHPNIVRLWDI 523
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -1
Query: 368 WKEHGEALNRLEFGHNQPFYYLIIANQSSRYVAQENLSALTVPPRMPHLEDLIAREFTHF 189
W + GEA+ +E + N S V ++ L P + +DLI R
Sbjct: 54 WNKGGEAMAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKS---DDLIVRRLAAL 110
Query: 188 NGYAYEPNDEK 156
GY NDEK
Sbjct: 111 EGYEMVSNDEK 121
>03_02_0132 -
5808606-5808696,5808804-5808875,5809133-5809204,
5809299-5809379,5809475-5809618,5809708-5809779,
5810027-5810140,5810684-5810755,5811462-5811609,
5812120-5812231
Length = 325
Score = 27.9 bits (59), Expect = 9.3
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = -1
Query: 695 RLVDLLNPS-QNLDNVNQSHLSY--LRNE--VDLANYPELSYNALHCSH--ARLLSSLSY 537
+L D+L P L + +LS+ + E V+LAN PEL Y LH + R+ L
Sbjct: 155 KLQDVLPPEIGELKKLTHLYLSFNNFKGEIPVELANLPELRYLYLHENRFTGRIPPELGT 214
Query: 536 LANTIHITASDRYM 495
L N H+ + ++
Sbjct: 215 LKNLRHLDVGNNHL 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,250
Number of Sequences: 37544
Number of extensions: 377426
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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