Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_H18
(751 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 23 2.3
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 5.3
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 22 5.3
AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding prote... 22 5.3
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 5.3
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 7.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 7.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 7.1
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 9.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 9.3
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 23.4 bits (48), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 283 PRSHLAMVLPGVFSGFTSIIIS 348
PRS A VL V++GF II++
Sbjct: 631 PRSFSARVLGMVWAGFAMIIVA 652
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 5.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -3
Query: 746 LEVRAFVRDPAKLPEHLKDKVEIVKGNVLEPDSVH 642
L + P +LP+HL + K V+E +H
Sbjct: 367 LPTSTYSGSPTELPKHLPTSLTKSKMEVMELSDLH 401
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding protein
ASP6 protein.
Length = 146
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 106 DQIFKCYPKCSLIAT 62
D+ CY KC +IAT
Sbjct: 65 DERLMCYMKCIMIAT 79
>AF339140-1|AAK01304.1| 120|Apis mellifera odorant binding protein
protein.
Length = 120
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 106 DQIFKCYPKCSLIAT 62
D+ CY KC +IAT
Sbjct: 39 DERLMCYMKCIMIAT 53
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.2 bits (45), Expect = 5.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 681 LDLVFKMFWEFXWVTYERSYF 743
+++V KM W + + YE S +
Sbjct: 272 VEIVMKMKWSYVSIIYEESNY 292
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +3
Query: 648 RVWF-----ENISFDYLDLVFKMFWEF 713
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +3
Query: 648 RVWF-----ENISFDYLDLVFKMFWEF 713
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 7.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +3
Query: 648 RVWF-----ENISFDYLDLVFKMFWEF 713
R WF +I DY+ L+F F +F
Sbjct: 166 RTWFFLDLISSIPLDYIFLIFNQFQDF 192
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +2
Query: 374 AETRRSNLSRCLSEPGTFSCGLRSN 448
AE S + P TF+C +R N
Sbjct: 310 AEIEPSTQTIDFGRPATFTCNVRGN 334
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 21.4 bits (43), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 590 DLAPTSDLSEGTKNIIDAMRAKNVKT 513
D+ P EG+K I + KNV T
Sbjct: 159 DVIPIRRTGEGSKPIFEREEIKNVLT 184
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.4 bits (43), Expect = 9.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 225 MPMTALXVFGFGKRVH*ECAEVALSNGPARCLLRVHF----NNHFSAWV 359
+P T+L + GK + V LS C+L VHF ++ S WV
Sbjct: 302 IPPTSLAIPLLGKYLLFTMILVTLSIWITVCVLNVHFRSPSTHNMSPWV 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,851
Number of Sequences: 438
Number of extensions: 4537
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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