Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H13
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    26   6.5  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.6  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    25   8.6  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   8.6  

>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 498 FKSEFYDDFGTFVFNDGVVSATIAPSDVTASPESTEPRSNTS 373
           +K E  D +G F+FN+  V   +  +  T SP+ + P S TS
Sbjct: 134 YKKEDADKYG-FIFNENSVPRVLKKAPSTHSPQLSVP-SKTS 173


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 250 RASWRTNLLIQLCTTKTSLLRYNYIDFRCVI 158
           R SW  NLL++L    +  +  N+   RC++
Sbjct: 612 RNSWARNLLLRLTGCSSEAIVENFKQLRCLL 642


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 176 RLPMRHRKIVLEEPPSQPLAS 114
           ++  R RKI+L EPP  P+A+
Sbjct: 95  KIDPRGRKILLTEPPMNPVAN 115


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 460 DECAKVVIKFRFKCEASYIARSIPSSAPLFLCPLAKGCCSSFVR 591
           D+C + +IK+     +SY+ R + S     L      CC  F+R
Sbjct: 107 DKCWEPIIKYIRDQHSSYLRRELNSHREKRLQDTRVHCCLFFIR 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,380
Number of Sequences: 5004
Number of extensions: 52261
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)