Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H12
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   3.1  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   4.1  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    26   5.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.4  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.4  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.4  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 431  PTNFSTSKEQPQKDLPSKLT 372
            P N  T+K++ QKDL  KLT
Sbjct: 1141 PNNILTTKQRTQKDLHDKLT 1160


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 254 LVPSWSTGWSTSSRLKELSICAHQH 180
           L+P  +T WS  S LK  S CA+ +
Sbjct: 337 LIPCNATSWSAYSLLKNCSDCANSY 361


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 513 LFITHGGLLSTTEA-LHYGVPIIGIPVFADQFLNIKRAT 400
           +F THGGLLS  +  L YG P  G  + A       +AT
Sbjct: 114 VFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQAT 152


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = -3

Query: 336 IDEILNNSKY-RENIKQL--SLVYHDRPVSPGAELVHWVEHVVKT 211
           ++++LN+  Y +E + Q+  +L+Y +R +   A++ H +E  VKT
Sbjct: 342 VEKMLNDDTYFQEMVIQMCENLLYRERLLRTQAKIWHELEMAVKT 386


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 333 DEILNNSKYRENIKQLSLVYHDRPVSPGAELVH-WVEHVVKT 211
           D I+   K + N+ +   + +  P+SP   L+H W  +++ T
Sbjct: 177 DSIMPLLKLQSNLTEAKTLLYQNPISPEDVLLHFWDRNLMST 218


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 266 VRCLLVPSWSTGW 228
           VRCL+ P + TGW
Sbjct: 744 VRCLIGPDYETGW 756


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 555 WAPQQSILAHPNCVLFITHGGLLSTTEALHY 463
           W P     A    VL+  HGG L     LHY
Sbjct: 88  WVPAGEKPAEGWPVLYFIHGGWLQVGNPLHY 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,136
Number of Sequences: 5004
Number of extensions: 61909
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)