Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_H06
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 257 6e-69
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 242 2e-64
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 153 1e-37
11_04_0128 + 13752727-13752809,13752922-13753129,13753238-137533... 31 0.96
07_03_1052 + 23598547-23600181 30 1.7
08_01_0661 - 5708088-5708131,5708217-5710048,5710527-5710625,571... 30 2.2
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 30 2.2
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 29 3.9
02_03_0131 - 15576422-15577021 29 3.9
12_01_0084 - 678324-679643 29 5.1
11_01_0083 - 629885-631189 29 5.1
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 257 bits (630), Expect = 6e-69
Identities = 113/187 (60%), Positives = 149/187 (79%)
Frame = -2
Query: 740 QPIXAFHRDEWLPESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPH 561
QP+ A+H + + + LPI+YAG STCFR+E GSHGRDT GIFRVHQFEK+EQF +TSP+
Sbjct: 186 QPLCAYHLGDRIYPAELPIRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPN 245
Query: 560 DNASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASKKLDLEAWFPGSGAFRELV 381
DN SW+M +EMI N+E+F K +GLPY++V+IVSGALN AA+KK DLEAWFP S +RELV
Sbjct: 246 DNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELV 305
Query: 380 SCSNCLEYQARRLLVRYGQTKKMNAATEYVHMLNATMCATTRVICAILEVHQTEDGIKVP 201
SCSNC ++QARRL + YGQ K + ++VHMLN+T+ AT R +C ILE Q E+G++VP
Sbjct: 306 SCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATERTLCCILENFQRENGVEVP 365
Query: 200 EILKPWL 180
+ L+P++
Sbjct: 366 KALQPYM 372
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 242 bits (593), Expect = 2e-64
Identities = 106/169 (62%), Positives = 138/169 (81%)
Frame = -2
Query: 686 IKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNASWQMMDEMINNAEEF 507
++YAG STCFR+E GSHGRDT GIFRVHQFEK+EQF +TSP+DN SW+M +EMI N+E+F
Sbjct: 245 MRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDF 304
Query: 506 CKALGLPYRVVNIVSGALNHAASKKLDLEAWFPGSGAFRELVSCSNCLEYQARRLLVRYG 327
K +GLPY++V+IVSGALN AA+KK DLEAWFP S +RELVSCSNC ++QARRL + YG
Sbjct: 305 YKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYG 364
Query: 326 QTKKMNAATEYVHMLNATMCATTRVICAILEVHQTEDGIKVPEILKPWL 180
Q K + ++VHMLN+T+ AT R +C ILE Q E+G++VP+ L+P++
Sbjct: 365 QKKNDEQSKQFVHMLNSTLTATERTLCCILENFQKENGVEVPKALQPYM 413
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 153 bits (372), Expect = 1e-37
Identities = 82/199 (41%), Positives = 116/199 (58%), Gaps = 13/199 (6%)
Frame = -2
Query: 737 PIXAFHRDEWLPESSLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHD 558
P+ H D LP+S LP KY S CFR E G+ G TRG++RVHQF KVE FV P +
Sbjct: 343 PVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEE 402
Query: 557 NASWQMMDEMINNAEEFCKALGLPYRVVNIVSGALNHAASKKLDLEAWFPGSGAFRELVS 378
S + +E+I EE +LGL ++ +++ +G L A +K D+EAW PG + E+ S
Sbjct: 403 --SDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLDRYGEISS 460
Query: 377 CSNCLEYQARRLLVRYGQT------------KKMNAATEYVHMLNATMCATTRVICAILE 234
SNC +YQ+RRL +R+ + K + T++VH LNAT A R+I ILE
Sbjct: 461 ASNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFVHTLNATAVAVPRLIICILE 520
Query: 233 VHQTEDG-IKVPEILKPWL 180
Q EDG + +PE L+P++
Sbjct: 521 NFQQEDGTVVIPEPLRPFM 539
>11_04_0128 +
13752727-13752809,13752922-13753129,13753238-13753303,
13753611-13753767,13755629-13755712,13756355-13756461,
13756832-13756958,13757319-13757407,13757812-13757943
Length = 350
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 622 RVSRP*DPTSCLKHVESPA--YLMGRDDSGSHSS-LWKAXMG 738
R+ P D S + + PA Y+ GRDDS HS+ WK +G
Sbjct: 254 RLGEPEDIASLVAFLSMPASSYITGRDDSVGHSNRCWKQSLG 295
>07_03_1052 + 23598547-23600181
Length = 544
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -1
Query: 366 SGVPSQKIACKVRSDEKDERGH*IRAHAERDHVRHHQGHLRHTRSTPDRG-RHQGTGNPE 190
S +PSQ + SD H RA ++ V HH G H +PD G Q T N
Sbjct: 14 SNIPSQNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSH---SPDAGYESQATPNKY 70
Query: 189 TLAS 178
TL S
Sbjct: 71 TLDS 74
>08_01_0661 -
5708088-5708131,5708217-5710048,5710527-5710625,
5711015-5711508,5711579-5711632,5712597-5712683,
5712684-5712776
Length = 900
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = -2
Query: 656 RQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNAS---WQMMDEMINNAEEFCKALGLP 486
R +GS G F + ++ F L N W+ + + E +CK
Sbjct: 590 RPSLGSKGWYFTFYFSEAALQFIKSFPLPDAKPNCQSGPWEPSFDDLEATENYCKIARSA 649
Query: 485 YRVVNIVSGALN 450
YRV+ +VSG N
Sbjct: 650 YRVIKVVSGPHN 661
>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -3
Query: 694 LFPSNMRDSPHASD--KRLDLMDVTRVVSFEYI-NLKRWNNLF*HLLMITHLGK 542
L N+ D PH + + L+ + VV Y LKRW + + + + H+GK
Sbjct: 1254 LMELNINDCPHLKSLPESIQLLPMLEVVKVSYCPELKRWYEIEENKMKLAHIGK 1307
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 327 SDEKDERGH*IRAHAERDHVRHHQGHLRHTRSTPDRGRH 211
+ E+ R H RAH+ R H HH H RH RH
Sbjct: 684 AQERARRRH-KRAHSHR-HSHHHDAHKRHKTELAGHRRH 720
>02_03_0131 - 15576422-15577021
Length = 199
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 285 AERDHVRHHQGHLRHTRS--TPDRGRH--QGTGNPETLAS 178
A+R H RH H RS +PD GRH + G+P A+
Sbjct: 70 ADRSHRRHSHSHSHRGRSSPSPDAGRHKRRRDGSPAAAAT 109
>12_01_0084 - 678324-679643
Length = 439
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 355 WYSRQLLQETSSLNAPDPGNQASKSSFLEAAWFR 456
W+SR+L + + P+P + S E+ WFR
Sbjct: 235 WFSRKLQKLLYKIMDPNPSTRISIQKIKESTWFR 268
>11_01_0083 - 629885-631189
Length = 434
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 355 WYSRQLLQETSSLNAPDPGNQASKSSFLEAAWFR 456
W+SR+L + + P+P + S E+ WFR
Sbjct: 235 WFSRKLQKLLYKIMDPNPSTRISIQKIKESTWFR 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,057,964
Number of Sequences: 37544
Number of extensions: 465419
Number of successful extensions: 1372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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