Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H05
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    30   0.28 
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.37 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   2.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.9  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    25   7.9  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 18/83 (21%), Positives = 40/83 (48%)
 Frame = -2

Query: 622  KEIDEFFSEGEVIYQGYVDDCRNTDNSWIETIAYNFHDESGLTVGLLKLHAGDDAVGVRW 443
            +EID ++++  ++Y  +  + + TD+       YN H+  G  +  LK  A    +G +W
Sbjct: 838  REIDSYWAQMRLLYSPFESEIKGTDSD-----VYN-HEIPGGQLTNLKFQATSLGLGTQW 891

Query: 442  VDITPDLKLYASHTEIVNSVLKL 374
             +     K Y    +++  ++K+
Sbjct: 892  AETK---KAYIEANKLLGDIIKV 911


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 553 TDNSWIETIAYNFHDESGLTVGLLKLHAGD 464
           TD + ++TIAYN+ ++   T+G  K H+ D
Sbjct: 442 TDYAGLKTIAYNYQNDPKATLGFSKKHSVD 471


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 694 ETAIRXFKEEALNSLSLADKIQWEKEIDEFFSEGE-VIYQGYVDD 563
           E +I    + ++NS    DK +W++++   F EGE V  + Y+ D
Sbjct: 2   EKSISSISKASMNSDEKLDKKEWDQQLPIDFGEGEDVTTEVYILD 46


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 299 LLYIISFYNCRK*NYKIFYVSIFY 370
           +L ++ ++ C   +Y +FY S+FY
Sbjct: 176 ILILLGYFQC---SYSVFYASVFY 196


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/66 (21%), Positives = 24/66 (36%)
 Frame = -2

Query: 223 KCFSDKDIDLHEVYSSFINPSAPIVCSRRHSRATAGSSTPRYSYL*IPAHRWHLSRSLNY 44
           K    ++  + +V      P   I+C        +G S P Y         +H+S    +
Sbjct: 22  KALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVPGH 81

Query: 43  VSYIYF 26
            S +YF
Sbjct: 82  ASKLYF 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,145
Number of Sequences: 5004
Number of extensions: 55159
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)