Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H05
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162...    31   0.88 
01_03_0097 + 12534273-12534494,12535970-12536056                       29   3.5  
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    29   4.7  
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009...    28   6.2  
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49...    28   6.2  
10_01_0055 - 785172-785997,786859-787394,787478-787695,787789-78...    28   8.2  

>01_06_1314 +
           36215607-36215734,36215911-36216043,36216135-36216281,
           36217172-36217348,36217469-36217717,36217917-36217964,
           36218364-36218419,36218639-36218720,36219260-36219515,
           36219563-36219629,36219688-36219724,36219918-36220030,
           36220838-36220988,36221352-36221538,36221768-36221841
          Length = 634

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 175 MNYTLHANLYLCLKNIYLHLYRLCI*QHNLCLVIILNTATITSIY 309
           MN+  H NL + L ++  +L ++ +     CL+ ILN+AT T ++
Sbjct: 420 MNFVCHGNLPMLLLSMVNNLQQILL----NCLIFILNSATFTHVF 460


>01_03_0097 + 12534273-12534494,12535970-12536056
          Length = 102

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 601 SEGEVIYQGYVDDCRNTDNSWIETIAYNFHDESGLTVGLLKLHAGD 464
           S G++    Y   C N +    + +   F ++SG+  GL++LH  D
Sbjct: 25  SRGQLQVGFYNTSCPNAETLVRQAVTNAFANDSGIAAGLIRLHFHD 70


>04_04_1267 -
           32257035-32257337,32257423-32257570,32257656-32257893,
           32257994-32258351,32258791-32258969,32259071-32259175,
           32259539-32260871
          Length = 887

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = -2

Query: 571 VDDCRNTDNSWIETIAYNFHDESGLTVGLLKLHAGDDAVGVRWVDITPDLKLYASHTEIV 392
           +D+CR    +    +AY   D  G   G   +    D + VR+VD   DL L  +  E+V
Sbjct: 386 LDECRARCFANCSCVAYAAADIRGAGGGSGCVMWTGDVIDVRYVDKGQDLYLRLAKPELV 445

Query: 391 NSVLKLRIK 365
           N+  +  IK
Sbjct: 446 NNKKRTVIK 454


>02_05_0285 -
           27498946-27499122,27499944-27500108,27500828-27500960,
           27501052-27501171,27502436-27502980
          Length = 379

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 135 IRVLPLDHQPHDILIYRFLHIDGTC 61
           +R LP  H  H + I ++LHI+ TC
Sbjct: 336 LRELPCGHHFHCVCIDKWLHINATC 360


>02_01_0071 -
           496936-497158,497231-497352,497918-497966,498141-498211,
           498368-498454,498660-498740,498838-498901,498994-499057,
           499246-499444,499916-500134
          Length = 392

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
 Frame = -2

Query: 586 IYQGYVDDCRNTDNSWIETIAYNFHDESG-------LTVGLLKLHAGDDAVGVRWVDITP 428
           IY G+V  C   +N   ++IA    DE+        + V   K        G+R    T 
Sbjct: 171 IYGGFVKWCMGKNNDGSDSIAVQLADEAHWNDLVIIIAVVSSKQKETSSTSGMRDSVETS 230

Query: 427 DLKLYASHTEIVNSVLKLR--IKN*NIKYFIILFSTIIKTN 311
            L  Y + T +   VLK+   IK+ N + F  + S + K N
Sbjct: 231 PLLQYRAQTVVPERVLKMEEAIKSRNFESFARIISLVEKWN 271


>10_01_0055 -
           785172-785997,786859-787394,787478-787695,787789-787891,
           788723-788770
          Length = 576

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 495 VKPLSSWKLYAMVSIQELSVFLQ 563
           +KP+SSW L  +  ++EL + L+
Sbjct: 319 IKPMSSWSLCTVTQVEELKMLLR 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,723
Number of Sequences: 37544
Number of extensions: 302437
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)