Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_H03
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    31   0.14 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    31   0.19 
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    28   1.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   4.0  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -2

Query: 569 SPELYCEICKTSMTCSEQMTMHLNGKRH---LTKEKQHILKMMKCGSENEKKQKAP 411
           S  + C +C  +     Q+  H N K+H   L K  Q I K  K   +N +  K P
Sbjct: 267 SNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIKKHAKEAQKNAESNKQP 322


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 17/80 (21%), Positives = 37/80 (46%)
 Frame = -2

Query: 476  EKQHILKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAI 297
            +K+H +         E+ +  P K+ K + S D+TAAD  +   +  +  ++   +   I
Sbjct: 1830 KKRHNIDSANLSRGTERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDVLNKI 1889

Query: 296  DEEDVAEITDEGSKTAEVSK 237
            DE ++ + + +     E +K
Sbjct: 1890 DESEIEQASSKKPGYVEKNK 1909


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 440 SENEKKQ--KAPVKQEKTEKSNDETAADCIIVANKAIDVDTAIDLLTQAID--EEDVAEI 273
           SE EK +     V+ E     ND+T    + VA+    VD  +D   +A+D  E++++++
Sbjct: 2   SEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDL 61

Query: 272 TDEGSKTAEVSK 237
            +   +  + SK
Sbjct: 62  DENQFENFDESK 73


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 71  PFKVLHQGHL--PSCRFRC-PNRNR 136
           P+KV+H  HL  P  RFR  PN +R
Sbjct: 125 PYKVIHAAHLTKPQLRFRVQPNNSR 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,194
Number of Sequences: 5004
Number of extensions: 40167
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)