Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_H03
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 37 0.014
U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth... 34 0.13
AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopente... 34 0.13
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 33 0.31
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL117195-17|CAB60767.1| 534|Caenorhabditis elegans Hypothetical... 30 1.6
Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 28 6.6
Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical pr... 28 6.6
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 6.6
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 28 6.6
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 28 6.6
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 28 6.6
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 6.6
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 6.6
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 6.6
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 6.6
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 28 8.7
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 28 8.7
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -2
Query: 581 AKPISPELYCEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKK--QKAPV 408
A + P LYC+ C+ S+ MT H+ K+H EK+ I +K G + +K + P
Sbjct: 65 AASVEP-LYCKACRKSIKSENAMTDHVASKKHKENEKK-IEDDVKKGPKQPRKKPENLPK 122
Query: 407 KQEK-TEKSNDE 375
K E E NDE
Sbjct: 123 KPESLKEPENDE 134
>U13642-2|AAG00042.2| 430|Caenorhabditis elegans Abnormal growth
rate protein 1 protein.
Length = 430
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 560 LYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 468
L CEIC SMT + H++GK+H KQ
Sbjct: 392 LNCEICNISMTGKDNWQKHIDGKKHKHHAKQ 422
>AY052773-1|AAL14112.1| 430|Caenorhabditis elegans tRNA isopentenyl
transferase protein.
Length = 430
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 560 LYCEICKTSMTCSEQMTMHLNGKRHLTKEKQ 468
L CEIC SMT + H++GK+H KQ
Sbjct: 392 LNCEICNISMTGKDNWQKHIDGKKHKHHAKQ 422
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 554 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHI-LKMMKCGSENEKKQK 417
CE+C + E HLN RHL + K+ + ++ S++ +KQ+
Sbjct: 534 CEMCSETFATKEAFLSHLNSARHLQQAKKQLENSLVDLNSQDVEKQR 580
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = -2
Query: 530 TCSEQMTMH-LNGKRHLTKEKQHILKMMKC-GSENEKKQKAPVKQEKTEKSNDETAADCI 357
T +++M + LN KR+ K+ HI ++ G + E + A E TA+ +
Sbjct: 56 TKNKRMALQCLNRKRNFEKQLAHIDGVLSTIGYQREALENASTNAEVLNVMG--TASKAL 113
Query: 356 IVANKAIDVDTAIDLLTQAIDEEDVA 279
A+ +D+D DL+ ++++VA
Sbjct: 114 KAAHNNMDIDQVHDLMEDIAEQQEVA 139
>AL117195-17|CAB60767.1| 534|Caenorhabditis elegans Hypothetical
protein Y57A10A.24 protein.
Length = 534
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 35 AFCSYGIPCCIPPFKVLHQGHLPSCRFRC-PNRNRLRP 145
AFC GI CC+PP + H + S F C P R P
Sbjct: 68 AFCHRGI-CCVPPPQCRHPAYRMSTGFPCLPKRKNNCP 104
>Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical
protein ZK938.3 protein.
Length = 660
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 280 RKLLMKVQKLLKFQKRLMTKIMR--TMQKKVREKVITVMLVMLRN 152
RK+ V+KL K +KRL+ I R M+K + K T ++LRN
Sbjct: 513 RKIYTVVKKLAKQEKRLLVSIDRIDVMKKDPKHKGYTHRQILLRN 557
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 319 MAVSTSIALFATIIQSAAVSSLDFSVFSCFTGAFCFFSFSDPHFIIFRMCCFSL 480
+AV TS+ + +I+ +A++S + ++ FC F S F++ + F L
Sbjct: 155 LAVYTSVIIRMVLIKKSALNSYELTILKQAILIFCPFQISSSVFLLCQTVKFEL 208
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +1
Query: 319 MAVSTSIALFATIIQSAAVSSLDFSVFSCFTGAFCFFSFSDPHFIIFRMCCFSL 480
+AV TS+ + +I+ +A++S + ++ FC F S F++ + F L
Sbjct: 155 LAVYTSVIIRMVLIKKSALNSYELTILKQAILIFCPFQISSSVFLLCQTVKFEL 208
>Z32683-3|CAA83620.1| 124|Caenorhabditis elegans Hypothetical
protein R07E5.5 protein.
Length = 124
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Frame = -2
Query: 554 CEICKTSMTCSEQMTMHLNG------KRHLT--KEKQHILKMMKCGSENEKKQKAPVKQE 399
C++C+ + SE++ H ++ L+ KEK I K ++C E K+ QE
Sbjct: 30 CDLCEKNFKTSEELVEHKKNYPRADVEKALSVYKEKDTIYKCLQCSGEFRLKEDFDYHQE 89
Query: 398 KTEKSND-ETAADCIIVANK--AIDVDTAIDLL 309
++ + ++A+ ANK D+D++ +++
Sbjct: 90 LHKRLGELKSASSNKSEANKDDESDIDSSFEII 122
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.6
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = -2
Query: 734 PHRAVVEGRKKPKNTILCQKSMEGRLEQLIRREKKNLKPIXXXXXXXXXXEAKPISPELY 555
P ++VVE K PK +KS E E+ KK P K SPE
Sbjct: 1711 PEKSVVEEVKSPK-----EKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKS 1765
Query: 554 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKT-EKSND 378
E S T E + + E + K K + E+K +P K+EKT EKS
Sbjct: 1766 AEEKPKSPTKKESSPVKM-----ADDEVKSPTKKEKSPEKVEEKPASPTKKEKTPEKSAA 1820
Query: 377 E 375
E
Sbjct: 1821 E 1821
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform d protein.
Length = 1379
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 542 KTSMTCSEQMTMHLNGKRHLTKEKQ--HILKMMKCGSENEKKQKAPVKQEKTEKSNDETA 369
K + +E T H+N ++ K ++ MM CG EN+K K V + +K+ + A
Sbjct: 1080 KATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQKSSKEEVTGSRQQKNEIKVA 1139
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform b protein.
Length = 4034
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 542 KTSMTCSEQMTMHLNGKRHLTKEKQ--HILKMMKCGSENEKKQKAPVKQEKTEKSNDETA 369
K + +E T H+N ++ K ++ MM CG EN+K K V + +K+ + A
Sbjct: 1080 KATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQKSSKEEVTGSRQQKNEIKVA 1139
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform a protein.
Length = 1633
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 542 KTSMTCSEQMTMHLNGKRHLTKEKQ--HILKMMKCGSENEKKQKAPVKQEKTEKSNDETA 369
K + +E T H+N ++ K ++ MM CG EN+K K V + +K+ + A
Sbjct: 1080 KATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQKSSKEEVTGSRQQKNEIKVA 1139
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 542 KTSMTCSEQMTMHLNGKRHLTKEKQ--HILKMMKCGSENEKKQKAPVKQEKTEKSNDETA 369
K + +E T H+N ++ K ++ MM CG EN+K K V + +K+ + A
Sbjct: 1080 KATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQKSSKEEVTGSRQQKNEIKVA 1139
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.6
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = -2
Query: 734 PHRAVVEGRKKPKNTILCQKSMEGRLEQLIRREKKNLKPIXXXXXXXXXXEAKPISPELY 555
P ++VVE K PK +KS E E+ KK P K SPE
Sbjct: 1711 PEKSVVEEVKSPK-----EKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKS 1765
Query: 554 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKT-EKSND 378
E S T E + + E + K K + E+K +P K+EKT EKS
Sbjct: 1766 AEEKPKSPTKKESSPVKM-----ADDEVKSPTKKEKSPEKVEEKPASPTKKEKTPEKSAA 1820
Query: 377 E 375
E
Sbjct: 1821 E 1821
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 6.6
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = -2
Query: 734 PHRAVVEGRKKPKNTILCQKSMEGRLEQLIRREKKNLKPIXXXXXXXXXXEAKPISPELY 555
P ++VVE K PK +KS E E+ KK P K SPE
Sbjct: 1711 PEKSVVEEVKSPK-----EKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKS 1765
Query: 554 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKT-EKSND 378
E S T E + + E + K K + E+K +P K+EKT EKS
Sbjct: 1766 AEEKPKSPTKKESSPVKM-----ADDEVKSPTKKEKSPEKVEEKPASPTKKEKTPEKSAA 1820
Query: 377 E 375
E
Sbjct: 1821 E 1821
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 6.6
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = -2
Query: 734 PHRAVVEGRKKPKNTILCQKSMEGRLEQLIRREKKNLKPIXXXXXXXXXXEAKPISPELY 555
P ++VVE K PK +KS E E+ KK P K SPE
Sbjct: 1711 PEKSVVEEVKSPK-----EKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEKSPEKS 1765
Query: 554 CEICKTSMTCSEQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKT-EKSND 378
E S T E + + E + K K + E+K +P K+EKT EKS
Sbjct: 1766 AEEKPKSPTKKESSPVKM-----ADDEVKSPTKKEKSPEKVEEKPASPTKKEKTPEKSAA 1820
Query: 377 E 375
E
Sbjct: 1821 E 1821
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 521 EQMTMHLNGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCII 354
E+ L R E+QH +++++ E++KK+K +E+ E+ E II
Sbjct: 465 EERARELERVRQEELERQHQMEILRQQEEDQKKKKLEKDREQREQQEAEELNRMII 520
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = -2
Query: 500 NGKRHLTKEKQHILKMMKCGSENEKKQKAPVKQEKTEKSNDETAADCIIVANKAIDVDTA 321
N +R KE++HI + + +E+ Q K ++ E++ +E A A DT
Sbjct: 381 NLERATQKEREHIERHREAQERHERLQALEAKDKEDERAREEDKAKAREEAKS--KKDTK 438
Query: 320 IDLLTQAIDEEDVAEITDEGSKTAEVSK 237
+ ID + + I + + E K
Sbjct: 439 AEKSKVTIDPKQIVNIPGKVYASQEAKK 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,063
Number of Sequences: 27780
Number of extensions: 242936
Number of successful extensions: 1119
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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