Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G24
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   3.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   8.8  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   8.8  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   8.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   MKLFLFYYDVNIYRVYTFINQLLIHLLKLECF 100
           MKL L YYD NI    T +N +  H +K   F
Sbjct: 95  MKLPLEYYDNNICGTITLLNVMREHRVKTVVF 126


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 207 KRALRNFLYVLMWNRVVKYRFIEGLPVFIIENDS 106
           +R +  FL+ L+ + + KY F    P++ I N++
Sbjct: 394 ERKISTFLFGLLASSIAKYSFFSNNPIWPILNET 427


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 201 ALRNFLYVLMWNRVVKYRFIEGLPVFIIEN 112
           A+RN   ++ W  ++KY  +  L   ++EN
Sbjct: 306 AMRNTFQLIKWASLLKYPLVPELTPAVVEN 335


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 245 CLKLFRNLHYEHT 283
           CLK F + HYEHT
Sbjct: 19  CLKRFYHQHYEHT 31


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 287 ILCVRSVSF*IILNKNLVYVF*KYRVIREHYGIFC 183
           I+   SVSF  + N+ +  +F  +R I E + ++C
Sbjct: 47  IVIYSSVSFLSVYNEKIGSIFEPFREIYEAFALYC 81


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 365 RCFIHKNYLSFLYWLLVSYNAVSHNTAGTYLPCYRR 472
           RC + K + + L W LV +N  + N  G ++  +R+
Sbjct: 202 RCVLDKKFNNTLTWKLVGFN--NANALGEHIGLWRK 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,654
Number of Sequences: 5004
Number of extensions: 57121
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)