Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G24
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122...    31   0.97 
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510...    29   3.9  

>02_01_0178 -
           1223725-1223736,1223900-1224025,1224404-1224649,
           1224731-1224922,1225059-1225138,1225233-1226826
          Length = 749

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 267 KFLNNFKQKSRIRVLEIPRYKRALRNFLYVLMWNRVVKYRFIEGLPVF 124
           K L +F     +R L +P Y  A+R  + V   N  V   FIE +P +
Sbjct: 480 KILVSFSCLEHLRRLRLPEYTEAVRRAVLVNQENAAVAALFIESIPSY 527


>10_08_0841 -
           20948719-20948919,20949624-20950388,20950475-20951023,
           20951097-20951237,20951313-20951519,20951556-20951724,
           20951899-20952003,20952087-20952208,20952291-20952412,
           20953234-20953516
          Length = 887

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 226 SRNTAL*ESITEFSVRVNVEPCCKISFYRRLTCIYNRE 113
           SR   L +S T  SV V   P CKI F  +   IY R+
Sbjct: 175 SRKMKLPKSKTALSVTVKANPSCKIWFVCKEHLIYTRD 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,783,868
Number of Sequences: 37544
Number of extensions: 289239
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)