Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G24
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 572 FSRTLRALSPARFAIIKVGPNCIRN*AKLCTGN 474
           F  T R  SP+  +I + G + +R+ + +C GN
Sbjct: 327 FKETCRC-SPSNPSITRTGLSSVRDSSIICGGN 358


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 252 NYLETYTTNTQYMGK 296
           N +ETY  NT Y  K
Sbjct: 195 NNIETYIVNTNYSSK 209


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 252 NYLETYTTNTQYMGK 296
           N +ETY  NT Y  K
Sbjct: 195 NNIETYIVNTNYSSK 209


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 224 RTRIRDFCLKLFRNLHYEHTIYGKNRNFTTSFLCL 328
           +T  R   L+L +  HY H +  + R      LCL
Sbjct: 13  QTYTRFQTLELEKEFHYNHYLTRRRRIEIAHALCL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,486
Number of Sequences: 438
Number of extensions: 4536
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)