Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G23
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical p...    26   10.0 
U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical...    26   10.0 

>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 323 LTGAYKITIF-FQFQSNLSECYESDRTYSKLLRKGFERYIVFFCNFLK 183
           L   YK+ I  FQF  N S    S     K++   F+ + +FF NFL+
Sbjct: 101 LRHTYKMPICSFQFWINFSN--NSTNCKMKIIFNNFKHFPMFFINFLR 146


>U88167-10|AAB42222.1|  804|Caenorhabditis elegans Hypothetical
           protein D2092.1a protein.
          Length = 804

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 328 FCLQALIKSQYFFNFNQIYLSAMKVIV 248
           F  Q L K +  FNF  I+LS + VIV
Sbjct: 711 FATQLLQKIKNTFNFTDIWLSTLAVIV 737


>U88167-9|AAK68288.1|  890|Caenorhabditis elegans Hypothetical
           protein D2092.1b protein.
          Length = 890

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 328 FCLQALIKSQYFFNFNQIYLSAMKVIV 248
           F  Q L K +  FNF  I+LS + VIV
Sbjct: 797 FATQLLQKIKNTFNFTDIWLSTLAVIV 823


>AF040655-11|AAB95040.1|  251|Caenorhabditis elegans Hypothetical
           protein T24E12.2 protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 160 IDYAFQISLIDLFFE*NGRNILSRGKNIMRN 68
           +DY + + L +  F+ NG+ ++ + K  +RN
Sbjct: 141 VDYQWALDLTEFLFDPNGKKVVPQIKMFVRN 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,532
Number of Sequences: 27780
Number of extensions: 165834
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)