Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G19
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   1.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   3.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.3  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   4.4  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   4.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   5.8  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   5.8  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   5.8  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   5.8  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    24   7.6  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 248 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 105
           LCW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 228 AQGNGY-EPIDNRPYIVNPPK-DYNPNGNGYEPIDNGAYYVDRPP 100
           ++GN   E I +R Y +       N +  GYEPI N A   D PP
Sbjct: 569 SKGNSQKEIIASRDYCIGTASLCLNEDVMGYEPIPNWADVSDLPP 613


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 184  DVRAVVNRFVAVSLSVG-HSQQSEDENHEEF 273
            +VR V NRFVAV L  G       DE  ++F
Sbjct: 1056 NVRRVTNRFVAVKLDCGIDGNIKADEVSDDF 1086


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 18  FXNILLIHYFVINFLRYSLLPTASTRXKGDGPR 116
           + NI  I   V++F  +    T+ ++ +G GPR
Sbjct: 12  YANISSIWLLVVSFFEWLFSATSISQQRGSGPR 44


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 248 LCWLWPTLKETATNLLTTARTS 183
           + W W TL  TA  +L+TA  S
Sbjct: 1   MIWFWSTLLVTAIAVLSTANES 22


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 204 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 118
           +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 168 DYNPNG-NGYEPIDNGAYYVD 109
           DYN N  N Y PI N  Y+++
Sbjct: 119 DYNNNRKNFYPPIQNSTYFIN 139


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 225 QGNGYEPIDNRPYIVNPPKDYNPNGNGY 142
           QG G +  D  PY ++P   Y P G  Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 252 LALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 118
           LAL ++   Q   Y  I+  P   N P  +N N N +  I   AY
Sbjct: 86  LALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAF-LISTNAY 129


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 NRFVAVSLSVGHSQQSEDENHE 267
           NRF+ + L VG + ++  +NH+
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQ 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,206
Number of Sequences: 5004
Number of extensions: 26647
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)