Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    33   0.051
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    31   0.20 
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   3.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   5.8  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   7.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.7  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 558 RVHGTLESLHEVISQDMLPKELGGTGRSLKEIQDDWIDLLSSKETSEFFREINKAQVNEA 379
           RV GT+E      S     KEL  T  S   + DD I  + ++E SE    +  A++ + 
Sbjct: 600 RVSGTMEDYDSRESTGHTIKELRSTPNSHGTVPDDSIFAMDNEENSELPPPLEPAEIGDP 659

Query: 378 YRMDDLKNEEMGLP 337
           +R  +     + LP
Sbjct: 660 FRSVNDPRRVLSLP 673



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -3

Query: 621 AVENLLRIITPLFNPKLVARFRVHGTLESLHEVISQDMLPKELGGTGRSLKEIQDDWIDL 442
           ++E++ R+I    N +     R H  +E + + I + +   +LGG+  S+ E     + +
Sbjct: 74  SLEDVPRLILTRSNSQEQTPLRTHTPVEYMSDSIHKSLADLQLGGSSYSVAESP---VPV 130

Query: 441 LSSKETSE 418
           L S   SE
Sbjct: 131 LQSSAVSE 138


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = -3

Query: 543 LESLHEVISQDMLPKELGGTGRSLKE-IQDDWIDLLSSKETSEFFREINKAQVNEAYRMD 367
           +E+LHE++ +D+   +LG    SL E +Q+    L ++K+T E       A+++   +MD
Sbjct: 22  VETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANKKTYE------DAKLSMGEKMD 75

Query: 366 DLKNEEMGLPGTFRTL 319
           DL +  + L     TL
Sbjct: 76  DLNSSIVSLLQELSTL 91


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 TDSNSFLYTYTYIDKLILRMRHLHLAIIKKIHLHRSHT 217
           T+SN  L     +D    R RH  LAI    HLH + T
Sbjct: 347 TNSNGMLLLTWLLDNSFFRNRHRLLAIHLATHLHTTCT 384


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 465  IQDDWIDLLSSKETSEFFREINKAQVNEAYRMD 367
            + DD I+LLSSK+T+   R +  + +  A+  D
Sbjct: 1482 VLDDTIELLSSKDTNSEVRHLVNSSLVSAFEND 1514


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = -3

Query: 681 VILSGYGARLKGIHIISTSKAVENLLRIITPLFNPKLVARFRVHGTLESLHEVISQDMLP 502
           +I   Y  + +G   +S    + N L+++ P   P L++ F+   TLE + +     +  
Sbjct: 9   LIFDSYDFKHEGKVHLSNFLPIINDLQLLHPASAPPLLSEFQKQCTLEFVRQNADLSITK 68

Query: 501 KELGGTGRSLKEIQDD 454
                  + L E +DD
Sbjct: 69  DNFRDVYKKLTENEDD 84


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 541 GVITRSNISGYVTKRAGRDWTIA 473
           G IT+S+  G++    G+DWT A
Sbjct: 386 GTITKSDALGHMFTLIGKDWTHA 408


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 329 KVPGNPISSFFKSSILYASLTCALFISRKNSEVSFELNRSIQSSCISLSDR 481
           KV  N  S FFK  I  A L  A FIS   + ++ E N  ++ S  S S +
Sbjct: 3   KVSANNQSGFFKFYIDTALLLNAEFISSFTNCINSEYNGKVKISYSSSSQQ 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,127
Number of Sequences: 5004
Number of extensions: 63406
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)