Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G12
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   2.1  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   4.8  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   4.8  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    24   8.5  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 80  LTFKWFIRFHVLFRSLTQQSCICIKLNKSDVI*FSHFSESEPILNV 217
           +TF W  R   L   + +  C  ++  + ++  F H + S P+  V
Sbjct: 446 ITFVWSARSSALLNIVHKSLCEAVRYTEMNINIFCHLTNSYPVEEV 491


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 68  VIYSLTFKWFIRFHVLFRSL 127
           +IYS+ + WF  F +LF S+
Sbjct: 329 LIYSILYLWFEAFPILFTSV 348


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 290 VSLWVRRHLPRLSPYHCRCPGEIWKVLVQDP 382
           VSL V  +L +L    C+   + WK L++DP
Sbjct: 80  VSLRVFSYLDQLDLCKCKLMSKRWKRLLEDP 110


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 292 NHLSAGVSKCQMKLSKYVNNLS 227
           N + AG   C+M+LSKY+ + S
Sbjct: 408 NLVVAGGGACEMELSKYLRDYS 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,030
Number of Sequences: 5004
Number of extensions: 28452
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)