Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G12
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1233 + 27224219-27225607                                         29   1.5  
08_02_0972 - 23187294-23188034                                         29   1.5  
03_06_0031 + 31178063-31178323,31178975-31179093,31179182-311793...    27   6.2  

>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 VRRHLPRLSPYHCRCPGEIWKVLVQD 379
           V RHLPR S    RC  + W+V++ D
Sbjct: 8   VLRHLPRRSLAASRCVCQSWRVIIDD 33


>08_02_0972 - 23187294-23188034
          Length = 246

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 404 RYGSNGAKDPAPGPSRSRQXXXXXXXXXXXXXXEPTMKPPKRRRVEMSDE 255
           R  S G  D   GP+  R+                T++PPKRR V +S +
Sbjct: 111 RPASGGGGDGGVGPAAMREMIFHIAALQPVNIDPETVRPPKRRNVRISTD 160


>03_06_0031 +
           31178063-31178323,31178975-31179093,31179182-31179368,
           31179455-31179601,31179686-31179802,31180017-31180307
          Length = 373

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 410 AGRYGSNGAKDPAPGPSRSRQ 348
           +GR+GS  A+ P PGPS  R+
Sbjct: 25  SGRHGSCAARVPCPGPSPFRR 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,193
Number of Sequences: 37544
Number of extensions: 179919
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)