Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G10
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    27   1.8  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   2.4  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   4.2  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   9.7  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -2

Query: 525 IKYRRCKLNSVNIKKHLESI----TKYKQNPKHKTIEQLHYV*FPASSLFPLT*DATEAF 358
           IK+++C +N V + K+   I      +K+  K K + QL    F   ++  L     +  
Sbjct: 355 IKFQKCDMNIVMLTKYFNEIWAVFIAHKEGEKEKVVAQLSGFSFYCKAIEFLQMLCQKRI 414

Query: 357 GNFNSKGLSSSIAVTL 310
             F + GL++    TL
Sbjct: 415 SRFKNGGLTAEAYKTL 430


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +1

Query: 13  STSLCALVLTFAAAHVS*IKLQSASQYTFNHLSDILFLTLKPIMSQLAEI--LTIQKNLE 186
           S +LCA ++TF  AH S          T   ++++     KP MS+   +  +   K +E
Sbjct: 439 SCNLCASIVTFLFAHES-------KGLTLEEINELYLSDAKPWMSRPKNLSEMAEAKEVE 491

Query: 187 ENFTRKMGELETQIQSA 237
              TR  GE    ++ A
Sbjct: 492 REETRPKGESARYLEHA 508


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 342 KGLSSSIAVTL*RVPLVVLITMIPSWVQ 259
           K LS  +  T+  + +++ +T +PSWVQ
Sbjct: 53  KRLSIIVWTTVYLIGIIIQVTTVPSWVQ 80


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 51  SSCVINKAAKRQPVH 95
           SSC+++ A KRQ VH
Sbjct: 82  SSCIVSNARKRQSVH 96


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 486 KKHLESITKYKQNPK 442
           KK L+S+ K+K NPK
Sbjct: 426 KKRLQSLEKFKNNPK 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,455
Number of Sequences: 5004
Number of extensions: 53958
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)