Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G10
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.64 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.64 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 446 GFCLYFVMLSKCFLMFTEFNLHLLY 520
           GFCL F+M  +C  +   F ++  Y
Sbjct: 452 GFCLLFLMFFECIAISWAFGVNRFY 476



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 257 CWTQDGIIVIKTTNG 301
           CWTQD  ++  T  G
Sbjct: 159 CWTQDEDVICSTPIG 173


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 446 GFCLYFVMLSKCFLMFTEFNLHLLY 520
           GFCL F+M  +C  +   F ++  Y
Sbjct: 505 GFCLLFLMFFECIAISWAFGVNRFY 529



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 257 CWTQDGIIVIKTTNG 301
           CWTQD  I+  T  G
Sbjct: 212 CWTQDEDIICSTPIG 226


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 410 DFLPHHSFHSH 378
           DF+P+HS H H
Sbjct: 119 DFVPNHSSHEH 129


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 422 SCSIVLCFGFCLYFVML 472
           S S ++C+G  +YFV L
Sbjct: 213 SASYLVCYGIWVYFVPL 229


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 270 SWVQQDRIPKSRRLNLCFKF 211
           +W+   R   SR L+LC KF
Sbjct: 484 AWIGAGRDSDSRLLDLCTKF 503


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 422 SCSIVLCFGFCLYFVML 472
           S S ++C+G  +YFV L
Sbjct: 89  SASYLVCYGIWVYFVPL 105


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 237 GTSECDPAGPRMES 278
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 237 GTSECDPAGPRMES 278
           G + CDP G R++S
Sbjct: 57  GEAPCDPVGRRLKS 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,365
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)