Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_G03
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    28   1.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   3.1  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   7.1  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    26   7.1  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   7.1  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +1

Query: 253 IESKRKRVNFHLKFF*LTILIFCFYVMHYMGVGEKHANILFFVKIVKKYCT 405
           I  K K  N H K   + +L+ C     Y+G  EKH        + KK CT
Sbjct: 254 IYKKMKEENIHHKSKAIVVLVQCIITSPYVGEFEKHG------ALFKKLCT 298


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 184 YITVMIFNHLVNETQTQSYHLIIIESKRKRVNFHLKFF*LTILIFCFYV---MHYMGVGE 354
           +IT+ ++  L  E Q  +  L    S++K   FHL    + I +F FY+   + + G G 
Sbjct: 752 FITLGLWMELETELQKYTEQLHPEYSRKKDAKFHLSLSHIRISLF-FYIFINVAFFGTGN 810

Query: 355 KHANILFFVKIVKKY 399
             +   F +  VK++
Sbjct: 811 VASLSTFALDSVKRF 825


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 40  NPSPKRRFTVIPLVPSQF 93
           +PS +  FT++PL+PS F
Sbjct: 126 HPSLRPYFTILPLIPSDF 143


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 228 LCFVN*MIKYHDGYILSIEHKLHKQXTYIKYVFIIXFGQAL 106
           L +V+  I Y   Y+  +E        Y  Y+FI+ FG  L
Sbjct: 9   LYYVSLTILYRVTYLFDLEEPWSTLRPYTPYLFILAFGSYL 49


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 658 HIYINYDQINKHKKTTCLFNLNFVSC*LNYKLYSNVYFKNFNKKNLPP 515
           +I++NY QIN+ ++          +C ++ KL   + + N  K++L P
Sbjct: 44  YIFVNYSQINRVRRELRTIGTPLETC-VSCKLIVKIDWLNEPKESLTP 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,689
Number of Sequences: 5004
Number of extensions: 45013
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)