Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F21
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   2.7  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   2.7  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   4.7  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   4.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.7  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   8.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   8.2  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 91  RVRNIPNVRQVQSR*QNGREERQPRELRSRGIQQRAQR*RPHEIDVTRRRGRCAELESLQ 270
           R + +   +Q   R +  RE+R   E   R +++R +R +  + +  RRR    E ES +
Sbjct: 671 REKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEE 730

Query: 271 QLKNVSSTSV 300
           + + +    +
Sbjct: 731 KERRLREAKI 740


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -2

Query: 221 ISCGR--HL*ARCCIPRDRNSLGCRSSRPFCYLDCTC 117
           ++CG   H+ ARC  PR R    CR+     +   TC
Sbjct: 128 MNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 397 DVHSSPAVVTHAISPLSALWT 335
           DVHS P ++ +  SP + +W+
Sbjct: 372 DVHSPPKLINYLTSPDTVIWS 392


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 163 RELRSRGIQQRAQR*RPHEIDVTRRRGRCAELESLQQLKNVSS 291
           RE + R  +QRAQ  R  EI V   +  CA   S     N+S+
Sbjct: 392 RERKERYKKQRAQAEREREILVRLSKRCCASSSSSSNSNNLST 434


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 292 LKKRSLAAVVTPVLHTAPAAVSHQSRVDVISEPAVVSHEIATPLAAAP-LAHSAIWTAPV 116
           L   SL++++ P L        ++  +DV++ P+V+   +A P+   P LA   I+   V
Sbjct: 455 LPSPSLSSLLFPTLRNFAKKSWYEKLMDVLAVPSVLIFTLALPVYQCPRLAVDPIYHMDV 514

Query: 115 AH 110
           ++
Sbjct: 515 SN 516


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 241 PAAVSHQSRVDVISEPAVVSHEIA-TPLAAAPLAHSAIWTAPVAHLGYS 98
           P AVSHQS+ +   +P  VS  I    L   P  +S ++ A    LG+S
Sbjct: 111 PPAVSHQSK-NTSQDPPYVSTPIGDIALRVMPDDNSCLFRALSKPLGFS 158


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 247 TAPAAVSHQSRVDVISEPAVVSHEIATPLAAAPLAHSAIWT 125
           T   ++   +R D  +   +   E+ATP  +  ++HS+++T
Sbjct: 234 TRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYT 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,480
Number of Sequences: 5004
Number of extensions: 33783
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)