Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F21
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 30 1.2
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 1.5
06_01_0525 - 3800578-3801018,3801395-3801504,3801608-3801683,380... 29 2.7
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 29 2.7
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 29 2.7
03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449 29 2.7
09_03_0149 + 12778165-12779127 28 3.5
05_04_0280 - 19752112-19752451,19754104-19755587 28 3.5
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 28 4.7
04_04_0765 - 27910189-27912393,27912521-27912598 27 6.2
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 27 6.2
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 27 8.2
05_01_0141 - 937428-937717,938483-938705 27 8.2
01_06_0343 + 28566513-28566644,28566791-28568494,28569178-285692... 27 8.2
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -3
Query: 286 KRSLAAVVTPVLHTAPAAVSHQSRVDVISEPAVVSHEI--ATPLAAAPLAHSAIWTAP 119
KR+ ++VVT + H PA SH R I++ EI A + A P + +A+ ++P
Sbjct: 445 KRTTSSVVTNIQHNGPATDSH--RHSSINDSGSAQQEISDANKVLAPPSSSNAVESSP 500
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.5 bits (63), Expect = 1.5
Identities = 27/83 (32%), Positives = 36/83 (43%)
Frame = -3
Query: 385 SPAVVTHAISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLHTAPAAVSHQSRVDV 206
+PA A P SA G S GHLL R + T +LH +SH+S +
Sbjct: 346 TPAPAPPAGQPSSAEDRATPTGISSSHQGHLLLCRPCLSHRTGLLHR--TRLSHRSGLPP 403
Query: 205 ISEPAVVSHEIATPLAAAPLAHS 137
++ P S + P APLA S
Sbjct: 404 LAAPLAPSRPPSPP--PAPLAPS 424
>06_01_0525 -
3800578-3801018,3801395-3801504,3801608-3801683,
3801757-3801909,3802088-3802159,3802242-3802322,
3802936-3803001,3803117-3803182,3803277-3803327,
3803429-3803512,3803988-3804088,3804188-3804329,
3804820-3804917,3805194-3805263,3805409-3805477
Length = 559
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = -3
Query: 295 LLKKRSLAAVVTPVLHTAPAAVSHQSRVDVISEPAVVSHEIATPLAAAPLAHSAIWTAPV 116
+L+++ + A P V H + A ++ P AAA AH A
Sbjct: 491 MLQQQMMMAAAAAAAAAPPPQVFHHHQQQQQHLQANPANPFGNPFAAAAAAHHPYGAAAA 550
Query: 115 AHLGYSGL 92
A GY+GL
Sbjct: 551 AGNGYTGL 558
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -3
Query: 373 VTHAISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLHTAPAAVSHQSRVDVISEP 194
VTH + LS ++ YGA ++ L + A VTP +A ++ S
Sbjct: 397 VTHEV--LSQVYDA--YGAVAVQRAQLFPRNG--ADVTPTKSSASGTSGTITKPVAESTA 450
Query: 193 AVVSHEI-ATPLAAAPLAHSAIWTAPVA 113
V H ATP ++APL S P++
Sbjct: 451 VAVEHVFPATPASSAPLISSTAMMTPIS 478
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 148 EERQPRELRSRGIQQRAQR*RPHEIDVTRRRGRCAELESLQQLKNVSSTSV 300
E+RQPRE+ + +Q A+R R E + R R +E + +V
Sbjct: 77 EQRQPREVEEQRTRQEAERRRLEEERQAQERDRLQHVEGTAVFRTPQQNAV 127
>03_01_0584 - 4325907-4326190,4326638-4327060,4327218-4327449
Length = 312
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 290 EETFFSCCSDSSSAHRPRRRVTSISCGR 207
E S SD SS+ RPRRRV + + GR
Sbjct: 72 ESLAVSFSSDVSSSSRPRRRVAAAAAGR 99
>09_03_0149 + 12778165-12779127
Length = 320
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/65 (26%), Positives = 24/65 (36%)
Frame = +3
Query: 15 IKLLSIKTKTTISCRI*FSLHHSPLKSPEYPKCATGAVQIAEWARGAAAKGVAISWDTTA 194
+ L + T + + F L H Y + A IA R G A++WD A
Sbjct: 111 VVFLMVAAHDTTAVLLTFLLRHLDGNRAAYERVAAEQEAIAAQRRRRGGSGSALTWDDLA 170
Query: 195 GSEMT 209
G T
Sbjct: 171 GMRYT 175
>05_04_0280 - 19752112-19752451,19754104-19755587
Length = 607
Score = 28.3 bits (60), Expect = 3.5
Identities = 26/82 (31%), Positives = 36/82 (43%)
Frame = -3
Query: 388 SSPAVVTHAISPLSALWTGATYGAHSISHGHLLKKRSLAAVVTPVLHTAPAAVSHQSRVD 209
SS A A + + W+ A HS + HL + V+P+ AA+ VD
Sbjct: 38 SSSAPPDPAAARWPSSWSPAAPPLHSFAASHLRE------AVSPIA----AAILALPGVD 87
Query: 208 VISEPAVVSHEIATPLAAAPLA 143
PA+V H T LA +PLA
Sbjct: 88 PDPLPALVEHNFPTLLAVSPLA 109
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 298 HLLKKRSLAAVVTPVLHTAPAAVSHQSRVDVI---SEPAVVSHEIATPLAAAPLAHSAIW 128
H+ SL + +P T ++ S+ + + PA+ + P+AA AH W
Sbjct: 166 HMSFSPSLQNLQSPTFFTTRSSESYLGESSIYGGGARPALAQFSYSQPIAATSAAHLVRW 225
Query: 127 TA 122
TA
Sbjct: 226 TA 227
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.5 bits (58), Expect = 6.2
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = -3
Query: 415 SHQSRVDVHSSPA-----VVTHAISPLSALWTGATYGAHSIS-HGHLLKKRSLAAVVTPV 254
S + V SSPA +V + SP +A+ A +G+ ++ + L SLAAVV+PV
Sbjct: 427 SSPTAVAASSSPAASPVDIVAASSSPAAAV---AAFGSPAVVVASNSLVAGSLAAVVSPV 483
Query: 253 LHTAPAAVSH 224
T+P A +
Sbjct: 484 CATSPVAACY 493
>02_05_0941 + 32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 48 ISCRI*FSLHHSPLKSPEYPKCATGAVQIAEWARGAAAKGVAISW 182
+SCR LH +PL P+ G G AA V+ W
Sbjct: 1026 LSCRFIDLLHEAPLSGHREPRSIVGGTLYCILLAGYAAVAVSAPW 1070
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 241 PAAVSHQSRVDVISEPAVVSHEIATPLAAAPLAHSAI 131
P A + Q++ + +VV+ + +A APL+H+A+
Sbjct: 696 PVAPNEQTQSQTLQGLSVVASSSSVDMAGAPLSHNAV 732
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 331 ATYGAHSISHGH 296
A YGAH +SHGH
Sbjct: 94 AAYGAHKLSHGH 105
>01_06_0343 +
28566513-28566644,28566791-28568494,28569178-28569240,
28569241-28569310,28570438-28570715,28571886-28571963,
28573017-28573715,28573811-28573913,28574096-28574196,
28574272-28574446,28574843-28575013,28575534-28575634,
28575706-28575771
Length = 1246
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 278 RTFLQQVSMRDRMSTICCTGPKSRERRNSVSYDSW 382
R LQ R R S + T +S+ RR+SVS +W
Sbjct: 564 RDGLQCAYPRRRSSRVSATSRRSKPRRSSVSAGAW 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,404,716
Number of Sequences: 37544
Number of extensions: 262932
Number of successful extensions: 1003
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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