Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_pT_F20
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 274 1e-74
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.32
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.3
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 28 1.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 27 2.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 3.0
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.3
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 7.0
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 26 7.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 7.0
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 274 bits (671), Expect = 1e-74
Identities = 126/191 (65%), Positives = 155/191 (81%)
Frame = -3
Query: 688 MPXQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 509
M Q+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 508 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 329
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 328 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 149
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
Query: 148 KPDTKAAQEYF 116
DTK ++YF
Sbjct: 181 --DTKNPEKYF 189
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 218 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 346
L Q Q L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 292 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 122
+NL++I + LPVG +++ LR V T K+G++ P K+ + K E
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 36 LQSKSSLFILVACSRGVVWCVGXLASPKYSCAALVSGLMVLAPGLQLA-GHTSP 194
+Q K S FI + SR ++ C G L K + + V G L PG LA H+SP
Sbjct: 94 IQPKLSFFIDSSLSRLLLLCFGCLKLSKSTSGSFVQG-DSLQPGDILAVNHSSP 146
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 477 PSTSQPILRNSSAFSENAIISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 656
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = +3
Query: 63 LVACSRGVVWCVGXLASPKY-----SCAALVSGLMVLAPG 167
L A G+VWCV A ++ C V+GL+ + PG
Sbjct: 262 LAASVGGIVWCVIDFAKNRHWSVVGFCEGAVAGLVAITPG 301
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Frame = -3
Query: 730 SVFVYYSKVFSFNKMPXQMTKPAPQFKATAVVNGE--------FKDISLSDYKGKYVVLF 575
S F+Y SF++ T +P+ TA+ FK + YK F
Sbjct: 36 SSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKD-----F 90
Query: 574 FYPLDFTFVCPTEIIAFSEKADEFRK 497
+ D+T PT + S+ DEF K
Sbjct: 91 VFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 667 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 536
P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 425 QAGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 261
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 503 ELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNV 619
E +LLRE +N+++ +RE EE++ R+R +
Sbjct: 166 ETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREI 204
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/53 (26%), Positives = 21/53 (39%)
Frame = -3
Query: 193 GEVCPANWRPGAKTIKPDTKAAQEYFGDANXPTHHTTPREQATRMKSDDLDCN 35
GE P+N ++P TKA + F N T ++ + LD N
Sbjct: 62 GEAIPSNSNSTNSKLEPSTKAPESRFSHINSKTERGYVTVESDMSSHNTLDRN 114
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 156 LAPGLQLAGHTSPCLSVNW 212
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,680
Number of Sequences: 5004
Number of extensions: 46874
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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