Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F18
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   310   1e-86
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   310   1e-86
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.7  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  310 bits (760), Expect = 1e-86
 Identities = 141/168 (83%), Positives = 156/168 (92%)
 Frame = -1

Query: 619 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 440
           VYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+
Sbjct: 133 VYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAA 192

Query: 439 YFGXYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDIL 260
           YFG YDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+IL
Sbjct: 193 YFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEIL 252

Query: 259 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 116
           YK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 367 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 194
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 193 GAFSNVLR 170
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  310 bits (760), Expect = 1e-86
 Identities = 141/168 (83%), Positives = 156/168 (92%)
 Frame = -1

Query: 619 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRAS 440
           VYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+
Sbjct: 133 VYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAA 192

Query: 439 YFGXYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDIL 260
           YFG YDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+IL
Sbjct: 193 YFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEIL 252

Query: 259 YKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 116
           YK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -1

Query: 367 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 194
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 193 GAFSNVLR 170
           G  +NV+R
Sbjct: 75  GNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 LISSYKTSTKAPPVPLRTLEKAPL 197
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 316 DTVRRRMMMQSGRAKSDILYKNTI 245
           DT+ R+ ++   + K D LY N +
Sbjct: 289 DTLIRKYIIPKEQVKEDSLYTNIV 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,780
Number of Sequences: 438
Number of extensions: 3061
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)