Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F17
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    27   4.1  

>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 106 GSKLKVKLQFIIKLSFIL--YSLPF*YLNYM*VHLTFLSQLNESVSIFYNFL 255
           G K    LQF+++L+F+L  + +   ++ Y    LTF+  L E+  +F + +
Sbjct: 113 GMKACHVLQFVLRLAFVLSVWLMIIPFITYWIWRLTFVRSLGEAQRLFLSHI 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,013,327
Number of Sequences: 37544
Number of extensions: 120668
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)