Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F17
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.74 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   6.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   9.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 97   HLSDVINVYSIPYYFVSSCDCK 32
            H  D+ N+Y++P    S+CD K
Sbjct: 1469 HYPDLHNLYAVPTDKKSACDSK 1490


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 173 NGK-LYNIKDNLIMNCSFTLSLEP 105
           NG  LY+I+ +L ++C   L L P
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYP 168


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 173 NGK-LYNIKDNLIMNCSFTLSLEP 105
           NG  LY+I+ +L ++C   L L P
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYP 168


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 152 KDNLIMNCSFTLSLEPETAFKRCDK 78
           +DN ++N   TL+ EP+   K  +K
Sbjct: 130 RDNHLVNAFKTLTQEPKNTNKFLEK 154


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  RHLSHRLNAVSGSKLKVKLQFIIKLSFILYSL 168
           RH +  L+  + S+L  ++QF+  + + L  +
Sbjct: 196 RHSTIHLSTGNYSRLACEIQFVRSMGYYLIQI 227


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 7   WILIPDSMIYNHMMIQSNTECYRHLSH 87
           W L     I ++ ++  NT+  + LSH
Sbjct: 279 WFLHKMKNIIDYYLVLENTDHTKQLSH 305


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 273 YKHYHIT 293
           Y+HYHIT
Sbjct: 8   YQHYHIT 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,401
Number of Sequences: 438
Number of extensions: 1795
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)