Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F15
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    29   1.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    27   3.2  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   4.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   5.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.9  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   9.9  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   9.9  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.9  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 560 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EG 736
           T P    S S + PPGN PG   + P++     G P++  Y  FP +  PH   + P + 
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY--FPDA--PHNCHSVP-QN 579

Query: 737 TSLP 748
           +S P
Sbjct: 580 SSYP 583


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 563 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 646
           RP+   SPSS S   +A  G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 545 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 631
           LP  RT   Y+ +PSS     NAP  T +
Sbjct: 35  LPQDRTTSTYRATPSSADAGYNAPSSTFE 63


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 472 ESKLLSPKRNVADAVRLLNLAGG 540
           +S LLSP+ N  D V L+++AGG
Sbjct: 318 QSFLLSPEENSLDDVLLVSIAGG 340


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 344 VSYRLF*FAAKKKQMVDYFHDYSSI 270
           + YRL  FA  K     Y HDYS I
Sbjct: 408 IPYRLQVFATAKVTFFQYLHDYSYI 432


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 446  NYYHSAESGTAYIRLHQKYTKQLFISNDVFMIMHVSYRLF 327
            N ++   +G +YIR+HQK    + +SN         Y +F
Sbjct: 1335 NVFNLLHAGVSYIRIHQKGYGVVGVSNKYGKRSKARYPIF 1374


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 669 RSGIEAFHVQYHPMERKRSHEK 734
           R G+  F  +   +ERKR HEK
Sbjct: 114 RDGVSPFSPEGEGLERKREHEK 135


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 457 PHALIIITQQSQGRLILDCTKSTLSNCL 374
           PH+L+ ++   +GRL+  C+ S+++  L
Sbjct: 734 PHSLLTLSIYRRGRLLQQCSPSSVTKYL 761


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 542  RLPSWRTRPMYKGSPSSVS 598
            R+P+W  R  Y+GSP  +S
Sbjct: 1082 RVPAWCDRICYRGSPDYIS 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,696
Number of Sequences: 5004
Number of extensions: 80411
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)