Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_pT_F15
         (824 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha...    30   8.8  
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha...    30   8.8  
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot...    30   8.8  

>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
           protein.
          Length = 1366

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = -3

Query: 816 GGQDXSGEPLYVARAVHEGATIPGKLVPSHGCAYVPWGGIEHGKPQYQILVGGPNNWVPT 637
           G     GEP  V      G + P  L    G A +P G  E G+P  +  +G P      
Sbjct: 616 GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGR---- 671

Query: 636 SGSNVPPGAF----PGGETED 586
            G+   PGA     P G T D
Sbjct: 672 DGARGAPGAVGAPGPAGATGD 692


>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
           protein.
          Length = 1366

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = -3

Query: 816 GGQDXSGEPLYVARAVHEGATIPGKLVPSHGCAYVPWGGIEHGKPQYQILVGGPNNWVPT 637
           G     GEP  V      G + P  L    G A +P G  E G+P  +  +G P      
Sbjct: 616 GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGR---- 671

Query: 636 SGSNVPPGAF----PGGETED 586
            G+   PGA     P G T D
Sbjct: 672 DGARGAPGAVGAPGPAGATGD 692


>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen
           protein.
          Length = 1186

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
 Frame = -3

Query: 816 GGQDXSGEPLYVARAVHEGATIPGKLVPSHGCAYVPWGGIEHGKPQYQILVGGPNNWVPT 637
           G     GEP  V      G + P  L    G A +P G  E G+P  +  +G P      
Sbjct: 436 GPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGR---- 491

Query: 636 SGSNVPPGAF----PGGETED 586
            G+   PGA     P G T D
Sbjct: 492 DGARGAPGAVGAPGPAGATGD 512


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,869,346
Number of Sequences: 237096
Number of extensions: 3208337
Number of successful extensions: 14824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14817
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)